Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021032
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.2  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    27   3.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.9  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    25   8.9  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   8.9  

>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -3

Query: 564 PQIARRYNHQQPNTDVNKLKLLNTYSVSLGSCDNLSIMSAIFRVL-NSFHNF 412
           P+  ++ + + PNTD+N  K+   Y+   G  DN +++S   R + N++ ++
Sbjct: 730 PRDQKQPDFKIPNTDINVYKIHFQYNNISGLADNYTLLSKHDRAMYNNYADY 781


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 657 EKIIRNMSPLRKLSPYVTMFTQTYIKKKKRLPQIARRYNHQQPNTDVNKL 508
           + I+R + P +KLSP  +    T+ ++K +LP  A   N      D + L
Sbjct: 259 QTILRGLPPAQKLSPNSSQSQITHNRRKHKLPLNATTNNSVVLTPDTSPL 308


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -3

Query: 633 PLRKLSPYVTMFTQTYIKKKKRLPQIARRYNHQQPNTDVNKLKLLNTYSVSLGSC 469
           P   L   V   T   ++ KKR  +++ RYN   P    +K + +    + L  C
Sbjct: 708 PSEALKTVVNQLTNELMELKKRYEKLSDRYNSLTPGYHKHKRQEIKNKLIKLIEC 762


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -3

Query: 531  PNTDVNKLKLLNTYSVSLGSCDNLSIMSAIFRVLNSFH 418
            PN +++K KLL    V+L S +NLS+    F +L +FH
Sbjct: 1201 PN-NLSKPKLLPLCLVNL-STNNLSVRLKAFELLGNFH 1236


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
 Frame = -3

Query: 585 IKKKKRLPQIARRYNHQ-QPNTDVNKLKLLNTYSVSLGSCDNLSIMSAIFRVLN-----S 424
           IK++ +LP  +R+Y       T V + + L  + +S  +C  +SI     +V       S
Sbjct: 137 IKQRMQLP--SRKYKSALHCATTVFRNEGLGAFYISYPTCIAMSIPFTAIQVATYDTCMS 194

Query: 423 FHNFIAIRLPSSYVLTGGRTSNESTRVGTTALPISAVK 310
           F N  A+  P+S++++GG +   ++ + T   P+  VK
Sbjct: 195 FLNPNAVYDPTSHIISGGLSGAIASSLTT---PLDVVK 229


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 639 MSPLRKLSPYVTMFTQTYIKKKKRLPQIARRY 544
           ++P+R+  PY+   +Q Y +  K+     RRY
Sbjct: 69  ITPVREFQPYLHEISQEYARYSKQKRASLRRY 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,891
Number of Sequences: 5004
Number of extensions: 54163
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)