Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021032
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-56|AAK68528.1|  166|Caenorhabditis elegans Hypothetical...    29   4.7  
U97403-7|AAB52475.2|  179|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AC024817-56|AAK68528.1|  166|Caenorhabditis elegans Hypothetical
           protein Y54G2A.3 protein.
          Length = 166

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 684 PLKAIRLGREKIIRNMSPLRKLSPYVTMFTQTYIKKKKRLPQIARRYN 541
           P K   L + +I RN   + K+SP V    Q YI+K++      R+++
Sbjct: 37  PYKLEALKKAQIERNNEWIEKMSPIVKYKIQEYIRKQRAKKMQRRKFS 84


>U97403-7|AAB52475.2|  179|Caenorhabditis elegans Hypothetical
           protein T10E9.8 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +2

Query: 503 NFNLFTSVLGC*WLYLLAIC 562
           N N F SVLG  W+YL AIC
Sbjct: 130 NENKFYSVLGPFWMYLGAIC 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,942,655
Number of Sequences: 27780
Number of extensions: 283188
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)