Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021032
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45670.1 68415.m05678 calcineurin B subunit-related contains ...    29   3.4  
At5g41390.1 68418.m05029 hypothetical protein contains 1 predict...    28   5.9  
At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family...    28   5.9  
At3g47920.1 68416.m05225 hypothetical protein similar to zinc fi...    28   5.9  
At3g02690.1 68416.m00260 integral membrane family protein simila...    28   5.9  
At3g49260.2 68416.m05384 calmodulin-binding family protein low s...    28   7.7  
At3g49260.1 68416.m05383 calmodulin-binding family protein low s...    28   7.7  

>At2g45670.1 68415.m05678 calcineurin B subunit-related contains
           Pfam PF00036: EF hand domain and Prosite PS00018:
           EF-hand calcium-binding domain; contains Pfam profile
           PF01553: Acyltransferase; weak similarity to Calcineurin
           B subunit isoform 2 (Protein phosphatase 2B regulatory
           subunit 2) (Protein phosphatase 3 regulatory subunit B
           alpha isoform 2) (Swiss-Prot:Q63811) [Mus musculus]
          Length = 539

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 474 SCDNLSIMSAIFRVLNSFHNFIAIR-LPSSY 385
           S  N+S+++ +FR+   FHNF+ +  LP  Y
Sbjct: 289 SWGNISLLTLMFRMFTQFHNFMEVEYLPVIY 319


>At5g41390.1 68418.m05029 hypothetical protein contains 1 predicted
           transmembrane domain;
          Length = 297

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 257 HIWHTYIIGTLLTETHYCF 313
           ++WH+ ++GT+  +T YCF
Sbjct: 19  NLWHSDLMGTVSADTPYCF 37


>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; Common family member: At2g22510
           [Arabidopsis thaliana]
          Length = 128

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 544 VSSCYLR*TFFFFYISLSKHRHIRTQFSQRTHIPNYFFPT*P 669
           V+S  +  TF  F+ SLS HRH+  Q +  T  P   FP  P
Sbjct: 9   VTSLVIALTFTSFFTSLSAHRHL-LQSTPVTQPPALTFPPLP 49


>At3g47920.1 68416.m05225 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 300

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 316 GRNRQGRGTYPRGLIRGPTTS 378
           G N QGRGTY +GL +G   S
Sbjct: 216 GLNHQGRGTYYQGLCQGQQVS 236


>At3g02690.1 68416.m00260 integral membrane family protein similar
           to PecM protein (GI:5852331) {Vogesella indigofera} and
           PecM protein (SP:P42194) [Erwinia chrysanthemi]
          Length = 417

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -3

Query: 474 SCDNLSIMSAIFRVLNSFHNFIAIRLPSSYVLTGGRTSNESTRVGTTALPISAV 313
           SC N S+ S      +S HN +  R+    V+    TSN ST    ++   S+V
Sbjct: 36  SCVNTSVKSLRHSRFDSKHNLVKRRINGDSVVRRSTTSNNSTEETESSSSSSSV 89


>At3g49260.2 68416.m05384 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 471

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 583 YISLSKHRHIRTQFSQRTHIPNYFFPT 663
           YI L  +R    Q    THIP+Y  PT
Sbjct: 358 YIDLGSYRQGHKQRKSPTHIPSYMAPT 384


>At3g49260.1 68416.m05383 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 471

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 583 YISLSKHRHIRTQFSQRTHIPNYFFPT 663
           YI L  +R    Q    THIP+Y  PT
Sbjct: 358 YIDLGSYRQGHKQRKSPTHIPSYMAPT 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,722
Number of Sequences: 28952
Number of extensions: 259212
Number of successful extensions: 509
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)