Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021030
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    29   0.54 
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    27   3.8  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   5.1  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    26   5.1  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    26   6.7  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    25   8.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.9  

>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
 Frame = -2

Query: 562 WAARALPVSPSGPSTASAWSRRLRLGCLAGGT-CRRICRRW*AHGRERSQWPPSSANPRQ 386
           WA R    +   P     W R   LG L+ G     +C        ER   PPS +NP  
Sbjct: 55  WATRLAHSTSHEPKYTYGWQRAEILGALSNGVFLIALCMFIFMEAIERFIEPPSVSNPTL 114

Query: 385 LCLVASRNL 359
           +  V S  L
Sbjct: 115 MFFVGSLGL 123


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 280 VEKSMPSIYMPPEEMYSETRQYVLRRADSV 369
           + +S+P++  PP + +SET  Y     DS+
Sbjct: 227 IHESLPALQNPPIQSHSETDLYADEELDSI 256


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 137 ESNPLFRWSMSLGEKSLATGIQLALPAVQLLET--PIV 244
           ES  +F W   +GE+     IQ +L A+QLLE   P+V
Sbjct: 431 ESFMMFVWKKKIGEELKKWIIQDSLKALQLLEAWDPVV 468


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 80  IPIVVSGIGVTEKLYFKIRESNPLF 154
           IP++ SG+    K+   +R+SNP+F
Sbjct: 263 IPLMASGLLEAHKVQSIVRDSNPMF 287


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 187 SDRHTASTPGGSTPGNSDRTTGQFLCKSLDVVEKSMPS 300
           +D +     G   PG S    G+F CK+   +   +PS
Sbjct: 61  NDDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPS 98


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 516 AVDGPEGETGRARAAQAVQHGARFKRKLQRRLT 614
           ++ GPEGE   A+ A  V  G+    K  ++ T
Sbjct: 288 SLGGPEGEVRNAKLADLVMRGSSHGNKTSQKST 320


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 333  DASIRPPTCRFRDATRHSCL 392
            +  I P TCRF D   H CL
Sbjct: 1714 EKEIIPDTCRFGDEFTHRCL 1733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,733
Number of Sequences: 5004
Number of extensions: 65170
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)