Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021030
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0151 - 10816905-10816977,10817090-10817421,10817884-108179... 32 0.43
02_05_0880 + 32466538-32467083,32467333-32467644,32467731-324682... 31 1.00
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 30 1.7
06_01_0768 + 5742938-5743196,5743291-5744729 30 2.3
01_06_0060 + 26068792-26069363,26069525-26070209 29 3.0
10_08_1019 - 22299800-22299946,22300040-22300109,22300930-223010... 29 4.0
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 29 4.0
02_05_1164 + 34628391-34628663,34628763-34628816,34628906-346291... 29 5.3
09_02_0361 - 7848477-7848601,7849498-7849900 28 7.0
08_02_0885 + 22268287-22268988 28 7.0
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 28 7.0
02_02_0061 + 6468190-6471046,6471318-6471736 28 7.0
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 28 9.3
01_04_0051 + 15430980-15431591 28 9.3
>11_03_0151 -
10816905-10816977,10817090-10817421,10817884-10817967,
10818045-10818092,10818233-10818287,10818378-10818433,
10818543-10818627,10819810-10819844
Length = 255
Score = 32.3 bits (70), Expect = 0.43
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 290 LFSTTSSDLQRNCPVVRS-EFPGVEPPGVLAVCRSLGTSHPGT*TNEREG-WTPLF 129
L+ST L P ++S EF + P G L +CR L TS +EG +TPLF
Sbjct: 185 LYSTIDFFLPAKNPQLKSLEFLHLAPEGSLRICRFLATSVDSLVKGGKEGIFTPLF 240
>02_05_0880 +
32466538-32467083,32467333-32467644,32467731-32468201,
32468481-32469246,32469332-32469774
Length = 845
Score = 31.1 bits (67), Expect = 1.00
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 487 QDAADVTTLMRWTGLKGRRAG-PGQPRRCSTEPGLRGSCRGDSPGKLWPKPRLS 645
Q ADV+ R G +G G PG+ +R +T+P RG RG+ P+P S
Sbjct: 101 QAVADVSPPGRGRGRRGGHGGGPGRGKRSATQPSARGG-RGNKVPYKPPRPSSS 153
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 178 EVPSDRHTASTPGGSTPGNSDRTTGQFLCKSL-DVVEKSMPSIYMPPEEMYSETR 339
E P HT TPG P D +F+ + +V+K I +PPE + S+TR
Sbjct: 588 ETPPASHTFPTPGVKIP---DANPAKFIPDVVRPMVDKPSRGIVIPPEAVESQTR 639
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -2
Query: 178 LTQGHRPTKERVGLPYFEVQFFCHSNTGHDDRYGCNP*DHFKVRHGWLI 32
L Q RP LPY V H T HD + C+ HF R WL+
Sbjct: 249 LVQSDRPATSVSELPYVFVDLD-HGCTYHDKLFYCDDERHFLHRAPWLL 296
>01_06_0060 + 26068792-26069363,26069525-26070209
Length = 418
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 568 TAWAARALPVSPSGPSTASAWSR 500
+A AAR LP SP GP S+W R
Sbjct: 153 SAHAARRLPPSPLGPRGTSSWRR 175
>10_08_1019 -
22299800-22299946,22300040-22300109,22300930-22301066,
22301142-22301195,22301638-22301694,22301814-22301846,
22301942-22302067,22302162-22302815,22303042-22303166,
22303770-22303935
Length = 522
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 249 WTVPLQVAGCGREEYAFNLYASRGDVLRDASIRPPTCRFRDATRH 383
W +++ GR++ A + A+ LR A + PP DA H
Sbjct: 81 WANRMEMESLGRDQMAMSHAAATATTLRAAHMAPPATTLSDALDH 125
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 62 VSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALP 214
V R+ I V+S + +K+ + P FRW S G+ G+ +A+P
Sbjct: 304 VRRLYDIANVLSSLNFIDKIQ-QADSRKPAFRWLGSAGKPKAENGVTIAVP 353
>02_05_1164 +
34628391-34628663,34628763-34628816,34628906-34629197,
34629316-34629764
Length = 355
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 618 QALAEAKAIKEQIHVLVYVAELVAKDSVLAWKKAKGLYASLSQPEP 755
+ LA A+ EQ+ +L V ++A + A ++A+GL S S P P
Sbjct: 134 ELLARGDALLEQLRILADVKRILADHA--AARRARGLARSRSMPPP 177
>09_02_0361 - 7848477-7848601,7849498-7849900
Length = 175
Score = 28.3 bits (60), Expect = 7.0
Identities = 28/84 (33%), Positives = 35/84 (41%)
Frame = -2
Query: 574 CCTAWAARALPVSPSGPSTASAWSRRLRLGCLAGGTCRRICRRW*AHGRERSQWPPSSAN 395
CC A A P +P + A+ G AG RRI RR A G + +Q P SA
Sbjct: 8 CCRRHLAVAAPRAPRLAAAAAVVLASSASGAAAGEPVRRIRRR--APGPQPTQ-PLKSAP 64
Query: 394 PRQLCLVASRNLHVGGRIDASLST 323
P Q + R G D S S+
Sbjct: 65 PTQPSVAEVRRAIGLGDDDPSASS 88
>08_02_0885 + 22268287-22268988
Length = 233
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 529 LKGRRAGPGQPRRCSTEPGLRGSC--RGDSPGKLWPK 633
+KG+ A P PRRC G +C R + P + W K
Sbjct: 51 VKGKTAIPATPRRCRRPDGSNPACKMRWERPPEGWMK 87
>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
Length = 519
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 603 RRLTRQALAEAKAIKEQIHVLVYVAELVAKDSVLAWKKAKGLYASLSQPEPE 758
RR+ R E K +KEQI++L +L ++ ++ + KGL LSQ E E
Sbjct: 382 RRIDRPETNEEKDLKEQINLL--RVDLKETEANISDEDKKGLSEKLSQMERE 431
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 412 PPSSANPRQLCLVASRNLHVGGRIDASLSTSPLEAYKL 299
P S N R L L++ + G I SLS PLE KL
Sbjct: 498 PSSIGNLRMLTLLSVAGNALSGEIPPSLSNCPLEQLKL 535
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 349 GRIDASLSTSPLEAYKLKAYSSRPHPATCRGTVQLYDRS 233
G I+ + SP + ++YS P P RG + Y RS
Sbjct: 133 GHIERNCQNSPRNLRRERSYSCSPSPRRGRGRSRSYSRS 171
>01_04_0051 + 15430980-15431591
Length = 203
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -2
Query: 562 WAARALPVSPSGPSTASAWSRRLRLGCLAGGTCRRICRR 446
WAA A P G ST +W R R+ A G RR+ RR
Sbjct: 136 WAAAAQRPWPRG-STTPSWRCRRRMEAGARGGARRLRRR 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,446,667
Number of Sequences: 37544
Number of extensions: 523393
Number of successful extensions: 1727
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1726
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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