Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021030
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24) 35 0.062
SB_6364| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_47628| Best HMM Match : HEAT (HMM E-Value=1.3e-24) 29 4.1
SB_44902| Best HMM Match : EGF (HMM E-Value=9.6e-06) 29 5.4
SB_51288| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11) 28 7.2
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25) 28 9.5
SB_38766| Best HMM Match : 7tm_1 (HMM E-Value=1e-07) 28 9.5
SB_13497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24)
Length = 536
Score = 35.1 bits (77), Expect = 0.062
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 26 KTNQPAMPNLEVVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQL 205
+T QP++ + V + IP+V + + Y RE N L + S + E S T I+
Sbjct: 16 ETLQPSLQEQDFVRKAGDIPVVKTAVEKITSFYHSARERNHLTKVSFAAAELSFWTAIKT 75
Query: 206 ALPAVQLL 229
+ A LL
Sbjct: 76 SQFAYSLL 83
>SB_6364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 31.5 bits (68), Expect = 0.77
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 225 SWKLRSYNWTVPLQVAGCGREEYAFNLYASRG 320
SW+ R Y W Q+ R+ + F+LY++RG
Sbjct: 220 SWRNRPYRWNNNNQLYRSSRKSFLFSLYSTRG 251
>SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 623
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 641 SLGFGQSLPGESPLQLPLKPGSVLHRLGCPGPARLP 534
SL Q+ ++ L +PL P + L+ + PGP R+P
Sbjct: 112 SLSEDQTKVSQTSLSMPLSPNATLNPMKHPGPRRIP 147
>SB_47628| Best HMM Match : HEAT (HMM E-Value=1.3e-24)
Length = 921
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 274 PATCRGTVQLYDRSFQELNRREC*LY 197
P+ RG V++YD S +E+ R C LY
Sbjct: 480 PSILRGRVEIYDHSPREMYLRSCYLY 505
>SB_44902| Best HMM Match : EGF (HMM E-Value=9.6e-06)
Length = 335
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 553 GQPRRCSTEPGLRGSCRGDSPGKLWPKPRLSKNKS 657
GQP+R GL+ + RG++ WP L KN S
Sbjct: 134 GQPKRGDIRVGLKYNIRGNNICNNWPAVFLMKNTS 168
>SB_51288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +1
Query: 160 VYVPG*EVPSDRHTASTPGG--STPGNSDRTTGQFLCKSLDVVEKSMPSIYMPPEEMYSE 333
V PG V + STPG STPG+ T G+ + D V +Y P + + +
Sbjct: 206 VSTPGDHVSTPGDHVSTPGDHVSTPGDHVSTAGEHVSTPGDHVSTPGEHVYTPGDHV-TT 264
Query: 334 TRQYVLRRADSVTRLGTAV 390
+V D V+ G V
Sbjct: 265 PGDHVSTPGDHVSTAGDHV 283
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = +1
Query: 160 VYVPG*EVPSDRHTASTPGG--STPGNSDRTTGQFLCKSLDVVEKSMPSIYMPPEEMYSE 333
V PG V + STPG STPG+ T G+ + D V +Y P + + +
Sbjct: 304 VSTPGDHVFTPGDHVSTPGDHVSTPGDHVSTAGEHVSTPGDHVSTPGEHVYTPGDHV-TT 362
Query: 334 TRQYVLRRADSVTRLGTAVLDS 399
+V D V+ G V S
Sbjct: 363 PGDHVSTPGDHVSTAGDHVTTS 384
>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
Length = 335
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 460 RICRRW*AHGRERSQWPPSSANPRQLCL 377
++CRRW G++RS W P L L
Sbjct: 51 KVCRRWYHLGKDRSLWKAVDLRPWPLAL 78
>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
Length = 626
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 20 MTKTNQPAMPNLEVVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSL 187
+TK + + P + V SR+ + + + +T+K KI + P+ S+ LG K L
Sbjct: 140 LTKLKKGSSPVIGVASRLGNKKEIDANGELTDKELAKIETAKPMTSASLKLGNKLL 195
>SB_38766| Best HMM Match : 7tm_1 (HMM E-Value=1e-07)
Length = 625
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 238 DRTTGQFLCKSLDVVEKSMPSI 303
D TTGQFLCK L V S P +
Sbjct: 378 DGTTGQFLCKLLYFVYASAPFV 399
>SB_13497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 49 EP*SGLKGCIHTDRRVRYWSDRKIVLQNKGVQPSLSLVYV 168
EP ++GC++ D V Y R+++ Q G +S+ YV
Sbjct: 316 EPKELIEGCLYLDPGVGYDEARRLLKQEYGDPYKISIAYV 355
>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1634
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -2
Query: 436 HGR-ERSQWPPSS--ANPRQLCLVASRNLHVGGRIDASL 329
HGR E+ ++ P S + + + V R + VGGR+DA+L
Sbjct: 1199 HGRHEKGEFAPLSPFVDDKGIIRVGGRIIRVGGRVDAAL 1237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,924,864
Number of Sequences: 59808
Number of extensions: 552994
Number of successful extensions: 1610
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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