Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021030
         (758 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209560-1|BAD92797.1| 1011|Homo sapiens polymerase (DNA directe...    31   6.0  
BT007235-1|AAP35899.1|  434|Homo sapiens cargo selection protein...    30   7.9  
BC019278-1|AAH19278.1|  434|Homo sapiens mannose-6-phosphate rec...    30   7.9  
BC005818-1|AAH05818.1|  434|Homo sapiens mannose-6-phosphate rec...    30   7.9  
AK223054-1|BAD96774.1|  433|Homo sapiens mannose 6 phosphate rec...    30   7.9  

>AB209560-1|BAD92797.1| 1011|Homo sapiens polymerase (DNA directed),
            delta 1, catalytic subunit 125kDa variant protein.
          Length = 1011

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -2

Query: 568  TAWAARALPVSPSGPSTASAWSRRLRLGCLAGGTCRRICRRW*AHGRERSQWPPSSA 398
            T W++ + P SPS  S++ +W+R +   C  GGT  R  RR  +  R  + WP  +A
Sbjct: 924  TTWSS-SWP-SPSCASSSPSWARAVPRLCYCGGT-TRAARRC-SRARWAASWPSPNA 976


>BT007235-1|AAP35899.1|  434|Homo sapiens cargo selection protein
           (mannose 6 phosphate receptor binding protein) protein.
          Length = 434

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 59  VVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALPAVQ 223
           VV RVAS+P++ S   +    Y   +ES P  +      EK + T    A+   Q
Sbjct: 25  VVDRVASMPLISSTCDMVSAAYASTKESYPHIKTVCDAAEKGVRTLTAAAVSGAQ 79


>BC019278-1|AAH19278.1|  434|Homo sapiens mannose-6-phosphate
           receptor binding protein 1 protein.
          Length = 434

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 59  VVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALPAVQ 223
           VV RVAS+P++ S   +    Y   +ES P  +      EK + T    A+   Q
Sbjct: 25  VVDRVASMPLISSTCDMVSAAYASTKESYPHIKTVCDAAEKGVRTLTAAAVSGAQ 79


>BC005818-1|AAH05818.1|  434|Homo sapiens mannose-6-phosphate
           receptor binding protein 1 protein.
          Length = 434

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 59  VVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALPAVQ 223
           VV RVAS+P++ S   +    Y   +ES P  +      EK + T    A+   Q
Sbjct: 25  VVDRVASMPLISSTCDMVSAAYASTKESYPHIKTVCDAAEKGVRTLTAAAVSGAQ 79


>AK223054-1|BAD96774.1|  433|Homo sapiens mannose 6 phosphate
           receptor binding protein 1 variant protein.
          Length = 433

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 59  VVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALPAVQ 223
           VV RVAS+P++ S   +    Y   +ES P  +      EK + T    A+   Q
Sbjct: 25  VVDRVASMPLISSTCDMVSAAYASTKESYPHIKTVCDAAEKGVRTLTAAAVSGAQ 79


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,966,070
Number of Sequences: 237096
Number of extensions: 2757345
Number of successful extensions: 8948
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8948
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)