Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021030
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical ...    31   1.2  
AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical...    30   2.1  
AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical...    30   2.1  
U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical ...    29   4.7  
U23528-7|AAK31383.2|  254|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical ...    28   6.3  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical
           protein F13H6.1 protein.
          Length = 690

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 214 GGSTPGNSDRTTGQFLCKSLDVVEKSMPSIYMPPEEMYSETRQ 342
           GGS P  S R T   L ++  ++  S PSI +PP+   S   Q
Sbjct: 584 GGSPPERSIRPTPSALAEATSLLALSAPSISVPPQPQASTVGQ 626


>AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18b protein.
          Length = 171

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 686 NQFGDIHQNVDLFFDSLGFGQSLPGESPLQLPLKPGSVLHRLGC 555
           + F D+H N+DL  D+     S  G + + L ++ G  + R GC
Sbjct: 82  DHFRDLHPNIDLILDAGSIISSGEGSTIVDLTVESGFRIVRSGC 125


>AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18a protein.
          Length = 244

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 686 NQFGDIHQNVDLFFDSLGFGQSLPGESPLQLPLKPGSVLHRLGC 555
           + F D+H N+DL  D+     S  G + + L ++ G  + R GC
Sbjct: 155 DHFRDLHPNIDLILDAGSIISSGEGSTIVDLTVESGFRIVRSGC 198


>U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical
           protein C14F5.4 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 29  TNQPAMPNLEVVSRVASIPIVVSG---IGVTEKLYFKIRESNPLFRWSMSLGEKSLATGI 199
           TN+ A   L     V S    VSG   + +  K YF  ++S+PL +  + LG  ++A  I
Sbjct: 127 TNRNAKSTLTTKDLVVSYSTAVSGALAMAIGLKTYFAKKQSSPLAQRLVPLGAVAVANAI 186

Query: 200 QLAL 211
            + +
Sbjct: 187 NIPM 190


>AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical
           protein Y58G8A.1 protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -2

Query: 364 NLHVGGRIDASLSTSPLEAYKLKAYSSRPHPATCRGTV 251
           N H G     S     LEA  LK Y+S+  P     TV
Sbjct: 14  NFHFGNAASQSTDERKLEAQLLKGYNSKVRPVKVESTV 51


>U23528-7|AAK31383.2|  254|Caenorhabditis elegans Hypothetical
           protein B0034.1 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 683 QFGDIHQNVDLFFDSLGFGQSLPGESPLQLP 591
           QFG    NV  FF  LG G  +P + P   P
Sbjct: 111 QFGSFMDNVKNFFSFLGRGMPMPPQQPPPSP 141


>AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical
           protein F18A12.7 protein.
          Length = 666

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 226 PGNSDRTTGQFLCKSLDVVEKSM-PSIYMPPEEMYSETRQYVLRRA 360
           P N   +   F+ K  +++E  + P I + P+E+   TR Y+ R+A
Sbjct: 87  PANESLSNETFIFKLAELLEGPLKPFIVVSPDEIIKVTRDYLERKA 132


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical protein
            K10D2.1a protein.
          Length = 1223

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 68   RVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGE 178
            R+ S+P++   IGVTE   + + E+  L  W++ LG+
Sbjct: 984  RLDSLPVL---IGVTEHAAYALTENGRLSTWNLKLGK 1017


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,655,559
Number of Sequences: 27780
Number of extensions: 394987
Number of successful extensions: 1059
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)