Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021030
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                28   0.083
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   3.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.1  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   3.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.4  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   7.2  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   7.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 0.083
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 635 GFGQSLPGESPLQLPLKPGSVLHRLGCPGPARLPFRPVHR-ISVVTSAASWLSGG 474
           G+G+ LPG + +  P    + +     PG   LP  P    +S V S+ S  SGG
Sbjct: 209 GYGRHLPGHAQMGRPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTS--SGG 261


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 531 EGETGRARAAQAVQHGARFKRKLQRRLTRQALAEA 635
           EG++GR+R +    + A   ++  RR  + AL EA
Sbjct: 25  EGQSGRSRVSDEQLNMALSDQRYLRRQLKCALGEA 59


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 76  IHTDRRVRYWSDRKIVLQ 129
           I  DRR R+ SDR + L+
Sbjct: 335 IQNDRRTRHLSDRVVALE 352


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 531 EGETGRARAAQAVQHGARFKRKLQRRLTRQALAEA 635
           EG++GR+R +    + A   ++  RR  + AL EA
Sbjct: 25  EGQSGRSRVSDEQLNMALSDQRYLRRQLKCALGEA 59


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 512 SVVTSAASWLSGGRYLSTYL 453
           SV     SWL  G+Y+S ++
Sbjct: 254 SVEVDQLSWLGSGQYISDFV 273


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 512 SVVTSAASWLSGGRYLSTYL 453
           SV     SWL  G+Y+S ++
Sbjct: 292 SVEVDQLSWLGSGQYISDFV 311


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 79  HTDRRVRYWSDRKIVLQN 132
           H D R+RYW    +V+ +
Sbjct: 275 HNDGRLRYWRTPSVVVSD 292


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 142 QPSLSLVYVPG*EVPSDRHTASTPGGSTPGNSDRTT 249
           +P  ++VY PG    + +     P G+T G ++  T
Sbjct: 391 RPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVT 426


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 142 QPSLSLVYVPG*EVPSDRHTASTPGGSTPGNSDRTT 249
           +P  ++VY PG    + +     P G+T G ++  T
Sbjct: 411 RPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVT 446


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 142 QPSLSLVYVPG*EVPSDRHTASTPGGSTPGNSDRTT 249
           +P  ++VY PG    + +     P G+T G ++  T
Sbjct: 360 RPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVT 395


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 418 QWPPSSANPRQLCLVASRNLHV 353
           Q PP   N  +  +VASR+++V
Sbjct: 905 QEPPQPPNSLETAMVASRSINV 926


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 418 QWPPSSANPRQLCLVASRNLHV 353
           Q PP   N  +  +VASR+++V
Sbjct: 901 QEPPQPPNSLETAMVASRSINV 922


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 384 SCLGFADDGGHCDR 425
           +CL     GGHC++
Sbjct: 63  NCLSLGKAGGHCEK 76


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 384 SCLGFADDGGHCDR 425
           +CL     GGHC++
Sbjct: 63  NCLSLGKAGGHCEK 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,378
Number of Sequences: 438
Number of extensions: 4887
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)