Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021030
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61600.1 68414.m06941 expressed protein                             29   2.5  
At5g54800.1 68418.m06826 glucose-6-phosphate/phosphate transloca...    29   3.4  
At1g73325.1 68414.m08487 trypsin and protease inhibitor family p...    29   3.4  
At4g22850.1 68417.m03300 expressed protein                             28   5.9  
At1g13300.1 68414.m01544 myb family transcription factor contain...    28   7.7  

>At1g61600.1 68414.m06941 expressed protein 
          Length = 421

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 602 LQLPLKPGSVLHRLGCPGPARLPFRPVHRISVVTSAASWLSGGR 471
           +Q P  PG    + G   P  L F  V R+  V     W+ GGR
Sbjct: 311 VQGPRGPGERRRKTGLRSPVGLSFVVVERMRRVMEEGGWVGGGR 354


>At5g54800.1 68418.m06826 glucose-6-phosphate/phosphate
           translocator, putative identical to glucose 6
           phosphate/phosphate translocator [Arabidopsis thaliana]
           gi|7229675|gb|AAF42936
          Length = 388

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 409 PSSANPRQLCLVASRNLHVGGRIDASLSTSPLEAYKLKAYSSRPHP 272
           PS+  P++  L  S+ LH+   + A       EAY  +A  S PHP
Sbjct: 34  PSTELPKRTVLAVSKPLHLSSSLRAKSPVVRCEAY--EADRSEPHP 77


>At1g73325.1 68414.m08487 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to Dr4
           [Arabidopsis thaliana] GI:469114; contains Pfam profile
           PF00197: Trypsin and protease inhibitor
          Length = 222

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 208 TPGGSTPGNSDRTTGQFLCKSLDVVEKSMPSI 303
           T GG  P N + +T Q LC +LD+V+ S P +
Sbjct: 55  TGGGLIPSNRNLST-QDLCLNLDIVQSSSPFV 85


>At4g22850.1 68417.m03300 expressed protein
          Length = 296

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 145 VGLPYFEVQFFCHSNTGHDDRY 80
           V LPYF  Q FCH   G  +RY
Sbjct: 148 VSLPYFIGQLFCHKIQGWLERY 169


>At1g13300.1 68414.m01544 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 344

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 130 NKGVQPSLSLVYVPG*EVP-SDRHTASTPGGSTPGNSDRTTG 252
           N G   +   V V G  VP SD  T  T GG+T  ++  TTG
Sbjct: 246 NNGNSQTQHFVVVGGLWVPQSDYSTGKTTGGATTSSTTTTTG 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,976,285
Number of Sequences: 28952
Number of extensions: 373251
Number of successful extensions: 1017
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)