Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021029X
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   4.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   4.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   5.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   7.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 247 PIWATHVLTSRESFFP 200
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 247 PIWATHVLTSRESFFP 200
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 295 PTVLKRSPYG 324
           P VLK+ PYG
Sbjct: 81  PEVLKKEPYG 90


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +2

Query: 239 PDWDSVHSNLSTKTFMIHILQFSKDHH 319
           P   SVHS+        H  Q S  HH
Sbjct: 380 PSGSSVHSDSGENNSRGHSGQSSSHHH 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,295
Number of Sequences: 438
Number of extensions: 1494
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)