Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021029X
         (361 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ...    32   0.100
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica...    31   0.30 
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica...    31   0.30 
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    29   0.93 
At5g11890.1 68418.m01391 expressed protein                             26   6.6  
At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containi...    26   8.7  
At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containi...    26   8.7  
At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containi...    26   8.7  
At1g71980.1 68414.m08320 protease-associated zinc finger (C3HC4-...    26   8.7  

>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
           similar to ethylene-responsive RNA helicase GI:5669638
           from [Lycopersicon esculentum]; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 501

 Score = 32.3 bits (70), Expect = 0.100
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 235 SPR-LGFCSLQPFNKNFYDPHPTVLKRSPYGGAEYRXNHEVTV 360
           SPR L    L PF KNFY   P V   +     EYR   E+TV
Sbjct: 47  SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITV 89


>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 591

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 238 PRLGFCSLQPFNKNFYDPHPTVLKRSPYGGAEYRXNHEVTV 360
           P+  F +L  F KNFY   PTV   +    A YR   +++V
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISV 155


>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 484

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 238 PRLGFCSLQPFNKNFYDPHPTVLKRSPYGGAEYRXNHEVTV 360
           P+  F +L  F KNFY   PTV   +    A YR   +++V
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISV 155


>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
            PF04931: DNA polymerase V
          Length = 1306

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 278  FLLKGWSEQNPNLGDACSDLQRILFSHQILQILQIYCHRCQIEPNYRRICC-LLQIWTTV 102
            +L + + E+    G   +  Q +LF  ++L +L+IY H    +P    +   L+Q     
Sbjct: 982  YLAQIFKEKRNQAGGETAQSQLVLFKLRVLSLLEIYLHENSDKPQVMTVYLNLVQAMLNP 1041

Query: 101  STA 93
            STA
Sbjct: 1042 STA 1044


>At5g11890.1 68418.m01391 expressed protein
          Length = 287

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 167 HRCQIEPNYRRICCLLQIWTTVSTAII 87
           H  Q  P+ RRICC    W+ +   I+
Sbjct: 67  HHHQSRPSCRRICCCCCFWSILIILIL 93


>At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 766

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 VDLEDLEDLVGKKDSLEVRTCVAQIGIL 254
           +D+  + DLV K D +++R  V  +GIL
Sbjct: 308 MDISRMNDLVLKMDEVKIRPDVVTLGIL 335


>At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 727

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 VDLEDLEDLVGKKDSLEVRTCVAQIGIL 254
           +D+  + DLV K D +++R  V  +GIL
Sbjct: 308 MDISRMNDLVLKMDEVKIRPDVVTLGIL 335


>At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 766

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 VDLEDLEDLVGKKDSLEVRTCVAQIGIL 254
           +D+  + DLV K D +++R  V  +GIL
Sbjct: 308 MDISRMNDLVLKMDEVKIRPDVVTLGIL 335


>At1g71980.1 68414.m08320 protease-associated zinc finger
           (C3HC4-type RING finger) family protein identical to
           ReMembR-H2 protein JR702 [Arabidopsis thaliana]
           gi|6942149|gb|AAF32326; contains Pfam domain, PF02225:
           protease-associated (PA) domain and Pfam domain,
           PF00097: Zinc finger, C3HC4 type (RING finger);
           identical to cDNA ReMembR-H2 protein JR702 mRNA, partial
           cds GI:6942148
          Length = 448

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 223 SEHASPR-LGFCSLQPFNKNFYDPH-PTVLKRSP--YGGAEYRXN 345
           S  ASP+ LG+ ++ PFN  +  P+ P+    SP   G + Y  N
Sbjct: 381 SHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPAMAGSSNYPLN 425


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,017,839
Number of Sequences: 28952
Number of extensions: 116713
Number of successful extensions: 267
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)