Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021028
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   157   1e-40
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   157   1e-40

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  157 bits (380), Expect = 1e-40
 Identities = 71/87 (81%), Positives = 80/87 (91%)
 Frame = +2

Query: 257 AAVSKTAVAXIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 436
           AA+SKT VA IERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANV
Sbjct: 21  AAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANV 80

Query: 437 IRYFPTQALNFAFKDKYKQVFLGGLTR 517
           IRYFPTQALNFAFKDKYKQVFLGG+ +
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFLGGVDK 107



 Score =  132 bits (319), Expect = 4e-33
 Identities = 61/84 (72%), Positives = 67/84 (79%)
 Frame = +1

Query: 511 DKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISK 690
           DK TQF RYF            TSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++K
Sbjct: 106 DKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTK 165

Query: 691 IFKSDGLIGLYRGFGVSVQGIIIY 762
           IFK+DG+ GLYRGFGVSVQGIIIY
Sbjct: 166 IFKADGITGLYRGFGVSVQGIIIY 189



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 198 MSNLADPVAFAKDFLAGGI 254
           MS LADPVAFAKDFLAGG+
Sbjct: 1   MSGLADPVAFAKDFLAGGV 19



 Score = 27.5 bits (58), Expect = 0.15
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 595 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 729
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 25.8 bits (54), Expect = 0.46
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 353 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 442
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 762 RASYFGFYD 788
           RA+YFGFYD
Sbjct: 190 RAAYFGFYD 198



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 344 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 481
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  157 bits (380), Expect = 1e-40
 Identities = 71/87 (81%), Positives = 80/87 (91%)
 Frame = +2

Query: 257 AAVSKTAVAXIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 436
           AA+SKT VA IERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANV
Sbjct: 21  AAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANV 80

Query: 437 IRYFPTQALNFAFKDKYKQVFLGGLTR 517
           IRYFPTQALNFAFKDKYKQVFLGG+ +
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFLGGVDK 107



 Score =  132 bits (319), Expect = 4e-33
 Identities = 61/84 (72%), Positives = 67/84 (79%)
 Frame = +1

Query: 511 DKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISK 690
           DK TQF RYF            TSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++K
Sbjct: 106 DKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTK 165

Query: 691 IFKSDGLIGLYRGFGVSVQGIIIY 762
           IFK+DG+ GLYRGFGVSVQGIIIY
Sbjct: 166 IFKADGITGLYRGFGVSVQGIIIY 189



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 198 MSNLADPVAFAKDFLAGGI 254
           MS LADPVAFAKDFLAGG+
Sbjct: 1   MSGLADPVAFAKDFLAGGV 19



 Score = 27.5 bits (58), Expect = 0.15
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 595 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 729
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 25.8 bits (54), Expect = 0.46
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 353 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 442
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 762 RASYFGFYD 788
           RA+YFGFYD
Sbjct: 190 RAAYFGFYD 198



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 344 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 481
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,235
Number of Sequences: 438
Number of extensions: 4354
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)