Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021027
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126...    34   0.12 
08_02_0396 - 16654603-16655030,16655803-16655906,16655988-166565...    31   0.84 
01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313     30   1.9  
09_06_0096 - 20840855-20841994                                         29   3.4  
04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756...    29   3.4  
12_02_1053 + 25704123-25704313,25704378-25704812,25705760-257059...    29   4.5  
03_05_0104 + 20855841-20856107                                         28   5.9  
08_01_0880 + 8639813-8640190                                           28   7.8  

>01_03_0278 -
           14509481-14509506,14510700-14512291,14512547-14512638,
           14513030-14514412
          Length = 1030

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
 Frame = +2

Query: 317 VRAYCGDLQPNERTTHQDLTEVKCVYTVLMHCHSVPELRDEVYCQLMKQTTSNRSQAPDS 496
           V +Y G   P+  +  + L E+  + T    C ++P+L    Y QL++    +R Q   S
Sbjct: 569 VASYKGTTLPSWVSMLEGLIELD-LSTSYTRCENIPQLWQLQYLQLLRLAGFDRLQYLCS 627

Query: 497 CQRAGD*C---PF*XXISHAQIRSGRSWWNTCRRPRRTGSDRVRARPPSASP 643
                  C   P    ++   ++S + WW+   R  +   D    + P+A P
Sbjct: 628 IGENSTTCSIFPKLKELTLENLKSFKGWWDKTERQEQPSCDNDNNKTPTALP 679


>08_02_0396 -
           16654603-16655030,16655803-16655906,16655988-16656579,
           16656820-16656993,16657105-16657309
          Length = 500

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 332 GDLQPNERTTHQDLTE-VKCVYTVLMHCHSVPELRDEVYC 448
           GD  P E    + L E V+C+ TV+ +    PEL D  YC
Sbjct: 92  GDDAPVESIAEEVLEEPVQCLETVIENTQEQPELEDAAYC 131


>01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313
          Length = 289

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 52  GGARCRSLR*STTGTYLATASPTRMRREP 138
           G A   SL  STT TYLA++S  R +R P
Sbjct: 54  GAALAASLAWSTTSTYLASSSRRRRKRPP 82


>09_06_0096 - 20840855-20841994
          Length = 379

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 255 PDPSPAISRLWSAPSKSTRCVSLCS*VTSPLSGFRVMPVGFSPHP-RWRGCR 103
           P P P    L +A +    C  + S  TSP +G  + P   S HP RWR  R
Sbjct: 321 PPPVPHHGHLAAAAAALLPCSRVVSAATSPAAGPPLPPRTVSLHPTRWRRWR 372


>04_04_1509 -
           34074206-34074398,34074506-34074777,34075411-34075608,
           34076092-34076187,34076318-34076500,34076597-34076799,
           34076887-34077013,34077098-34077292,34077400-34077540,
           34077669-34077812,34077876-34078040,34078776-34078976,
           34079049-34079195,34079275-34079427,34079731-34079833,
           34079954-34080069,34080168-34080349,34080442-34080541,
           34081200-34081527,34081605-34081834,34081979-34082110,
           34082787-34082859,34083274-34083338
          Length = 1248

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 380 VKCVYTVLMHCHSVPELRDEVYCQLMKQTTSNRSQA 487
           ++ V  +  H     ELRDE++ Q+ KQT +N  +A
Sbjct: 133 IELVAKLYKHTLKRSELRDELFAQISKQTRNNPDRA 168


>12_02_1053 +
           25704123-25704313,25704378-25704812,25705760-25705913,
           25706143-25706229
          Length = 288

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 101 WRQPLQ-RG*GENPTGITRNPESGLVTQEQSETQRVDLEGADHSREMAGDGSG 256
           W +P   RG  E+P G    P     ++ +S   R+   G  HS E  GDG G
Sbjct: 64  WLEPSAVRGPNEDPDGDGGRPHPRYQSRSRSLWGRIT--GRSHSSERGGDGQG 114


>03_05_0104 + 20855841-20856107
          Length = 88

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 545 AQIRSGRSWWNTCR-RPRRTGSDRVRARPP 631
           A + +G   W+  R RPRR G  R+R R P
Sbjct: 11  ADLNAGSGGWDRGRLRPRRWGRSRIRLRQP 40


>08_01_0880 + 8639813-8640190
          Length = 125

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 672 CSAAEGLPQVGEADGGRALTRSLPVRRGRRQVFHQERP 559
           C+    L +VGE  GG +  RSL   RGR +    + P
Sbjct: 79  CNGGGILARVGEGRGGESRARSLVEERGRARESRDQVP 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,629,528
Number of Sequences: 37544
Number of extensions: 392608
Number of successful extensions: 1212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)