Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021027
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 9e-09
SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14) 33 0.21
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 33 0.28
SB_14370| Best HMM Match : MyTH4 (HMM E-Value=9.3e-25) 31 1.1
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_10888| Best HMM Match : Collagen (HMM E-Value=7.5) 29 2.6
SB_34188| Best HMM Match : Astacin (HMM E-Value=0) 29 3.4
SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08) 29 3.4
SB_37820| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2143
Score = 57.6 bits (133), Expect = 9e-09
Identities = 31/68 (45%), Positives = 39/68 (57%)
Frame = +2
Query: 302 ECFTCVRAYCGDLQPNERTTHQDLTEVKCVYTVLMHCHSVPELRDEVYCQLMKQTTSNRS 481
ECF + + GD+ H+D TE+ VY +L C L DEVYCQL+KQ TSN+S
Sbjct: 1705 ECFHAIMRFMGDISMGRN--HKD-TEL--VYFLLKTCRENERLCDEVYCQLVKQVTSNKS 1759
Query: 482 QAPDSCQR 505
DSC R
Sbjct: 1760 ACEDSCSR 1767
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +1
Query: 511 RLMSILXXXFTCSDTLRPFLVEYLSAAASDRKRPCQGTAAVCLANLRKTLRCG 669
RL+ I+ TC + L+P+LV++L + ASD KR G AA+C NL KT + G
Sbjct: 1770 RLLIIMTSYVTCDEFLKPYLVKFLQSTASDPKREFHGAAAICEQNLMKTFKYG 1822
>SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)
Length = 1030
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 422 PELRDEVYCQLMKQTTSNRSQAP 490
PEL++E+YCQL+KQT+ + P
Sbjct: 883 PELQNEIYCQLVKQTSKQVHRGP 905
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 302 ECFTCVRAYCGDLQPNERTTHQDLTEVKCVYTVLMHCHSVPELRDE 439
EC ++A G +QPNE E C Y L+ + PE R++
Sbjct: 1269 ECSNLLQAMLGSVQPNEVEGEAGRQEAACPYDTLLSMTNTPEPREK 1314
>SB_14370| Best HMM Match : MyTH4 (HMM E-Value=9.3e-25)
Length = 618
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 422 PELRDEVYCQLMKQTTSNRSQA 487
PE+RDE+YCQL Q N ++
Sbjct: 488 PEVRDEIYCQLCNQVWGNPKES 509
>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 302 ECFTCVRAYCGDLQPNERTTHQDLTEVKCVYTVLMHCHSVPELRDEVYCQLMKQTTSN 475
+ F + Y GD +TT ++ C P +RDE+Y Q+ KQTT N
Sbjct: 1028 DVFKLILGYMGDRPIRVKTTRDIALDI-CT-----RGWETPLIRDEIYLQICKQTTDN 1079
>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 29.5 bits (63), Expect = 2.6
Identities = 26/104 (25%), Positives = 39/104 (37%)
Frame = +2
Query: 212 EGADHSREMAGDGSGXXXXXXXXXXXXXXXECFTCVRAYCGDLQPNERTTHQDLTEVKCV 391
EG D E + +GSG F A C L +R T ++ +
Sbjct: 386 EGEDKQDEFSSNGSGGGTIGESGKLPMLTNVAFLA-GAPC--LMRRDRATPNIVSSTSTI 442
Query: 392 YTVLMHCHSVPELRDEVYCQLMKQTTSNRSQAPDSCQRAGD*CP 523
Y L + P LR + L+ + N +QAP +C+ CP
Sbjct: 443 YETLDENDNKPGLRGR-HQGLIARIVVNLAQAPSNCKPKSAVCP 485
>SB_10888| Best HMM Match : Collagen (HMM E-Value=7.5)
Length = 208
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 593 AAADRYSTRNGLSVSEHVKXXXRMDISLRLAGRSRGPGTGSM-WSASSAGS 444
A R + G++ S H+ RM S R+AG R GTG M S AGS
Sbjct: 26 AGRGRMADSGGMAGSGHMAGSGRMAGSGRMAGSGRMAGTGRMAGSGHMAGS 76
>SB_34188| Best HMM Match : Astacin (HMM E-Value=0)
Length = 844
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 507 ARWQESGAWDRFDVVCFISWQYTSSRSSGT 418
ARWQ++G + + CF W Y + S GT
Sbjct: 750 ARWQKAG-YQATNAACFEFWYYMNGASMGT 778
>SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)
Length = 504
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 490 RLLPASRRLMSILXXXFTCSDTLRPFLVEYLSAAASDRKRPC 615
R L ++ R MS + +TC + +RP + AA ++ R C
Sbjct: 128 RSLNSADRAMSHISSQYTCDNNMRPGWYRFSGAAGTNMPRTC 169
>SB_37820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 431 RDEVYCQLMKQTTSNRS 481
RDE+YCQL KQ +N S
Sbjct: 14 RDEIYCQLCKQLVNNPS 30
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,465,553
Number of Sequences: 59808
Number of extensions: 431903
Number of successful extensions: 1038
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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