Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021027
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    64   1e-10
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    34   0.11 
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    29   2.3  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC024843-8|AAM48560.1|  726|Caenorhabditis elegans Hypothetical ...    27   9.2  
AC024843-7|AAF60843.2|  743|Caenorhabditis elegans Hypothetical ...    27   9.2  
AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 34/69 (49%), Positives = 47/69 (68%)
 Frame = +2

Query: 302  ECFTCVRAYCGDLQPNERTTHQDLTEVKCVYTVLMHCHSVPELRDEVYCQLMKQTTSNRS 481
            E F  +  + GD +P +++  + +T+V  V+ VL+ CH  P LRDEVYCQL+KQTTSN S
Sbjct: 2103 ETFHAIMKFMGD-EPLKKS--ESMTDV--VFKVLLICHRQPTLRDEVYCQLIKQTTSNIS 2157

Query: 482  QAPDSCQRA 508
            Q P+S  RA
Sbjct: 2158 QKPNSALRA 2166



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/53 (37%), Positives = 34/53 (64%)
 Frame = +1

Query: 511  RLMSILXXXFTCSDTLRPFLVEYLSAAASDRKRPCQGTAAVCLANLRKTLRCG 669
            RL++I+   F  S TL+P++++YL   A + +RP  GTA +C  N+ +T + G
Sbjct: 2168 RLLTIITAYFPSSLTLKPYVLQYLGDNADEWQRPFHGTARICQTNMIQTFKYG 2220


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
 Frame = +2

Query: 302  ECFTCVRAYCGDLQPNERT---THQDLTEVKCVYTVLMHCHSVPELRDEVYCQLMKQTTS 472
            E F  +  Y GD +P++R+   TH  LT+   ++ + +   S+  LRDE+YCQL+KQ T 
Sbjct: 1649 EIFAAIMKYMGD-EPSKRSRLGTH--LTDH--IFKLPI---SMEALRDELYCQLVKQLTL 1700

Query: 473  NRS 481
            N S
Sbjct: 1701 NPS 1703



 Score = 31.9 bits (69), Expect = 0.43
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +2

Query: 425  ELRDEVYCQLMKQTTSNRSQ 484
            +LRDE+YCQL KQ ++N S+
Sbjct: 1078 DLRDEIYCQLCKQLSNNPSK 1097


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +2

Query: 317 VRAYCGDLQPNERTTHQDLTEV---KCVYTVLMHCHSVPELRD-EVYCQLMKQTTS-NRS 481
           V+  C   QP ++ T+   T      C  +  +HCHS P +++ +  CQ   QTTS    
Sbjct: 62  VQTSCSCAQPVQQQTYLVPTSQCAPACQQSCQIHCHSAPFVQECQSSCQQSCQTTSCYTP 121

Query: 482 QAPDSC 499
            AP  C
Sbjct: 122 PAPAQC 127


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 639 EADGGRALTRSLPVRRGRRQVFHQERPERI 550
           EADGG     S P RRGRR +   E P R+
Sbjct: 53  EADGGETTENSSPERRGRRNI-PTEPPFRV 81


>AC024843-8|AAM48560.1|  726|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3c protein.
          Length = 726

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 497 RSRGPGTGSMWSASSAGSTPRHGVRALSDNALGP 396
           R  GP   SM +A   GS P HG + + D   GP
Sbjct: 29  RRPGPPVPSMRAAILGGSDPYHGFQPVVDTYNGP 62


>AC024843-7|AAF60843.2|  743|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3a protein.
          Length = 743

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 497 RSRGPGTGSMWSASSAGSTPRHGVRALSDNALGP 396
           R  GP   SM +A   GS P HG + + D   GP
Sbjct: 29  RRPGPPVPSMRAAILGGSDPYHGFQPVVDTYNGP 62


>AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3b protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 497 RSRGPGTGSMWSASSAGSTPRHGVRALSDNALGP 396
           R  GP   SM +A   GS P HG + + D   GP
Sbjct: 29  RRPGPPVPSMRAAILGGSDPYHGFQPVVDTYNGP 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,340,143
Number of Sequences: 27780
Number of extensions: 283510
Number of successful extensions: 716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)