Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021027
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.1  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    21   8.1  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 451 ADEADHIEPVPGPRLLP 501
           +DE  ++E V GP+ LP
Sbjct: 13  SDELRYLEKVRGPKYLP 29


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 256 PRPVACHFT 230
           PRP++CH T
Sbjct: 655 PRPISCHTT 663


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 568 LVEYLSAAASDRKRPCQGTAA 630
           ++ Y+S      K PC G AA
Sbjct: 5   VMPYVSTMPKSLKEPCDGCAA 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,445
Number of Sequences: 438
Number of extensions: 3365
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)