Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021026
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    31   0.14 
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    31   0.24 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    29   0.72 
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    29   0.96 
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.7  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    28   1.7  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    28   1.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   2.2  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   8.9  
SPAC959.10 |sen15||tRNA-splicing endonuclease subunit Sen15|Schi...    25   8.9  
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    25   8.9  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +1

Query: 535 YACPHCSAVYENSKSLHAHMKIHKPKQDNNAEAPLTYECELCCTVFSTNKSLKLHKRMH 711
           + CP CS  ++ S+ L  H+     +  + +E P  + C +C   FS   +L+ H+R+H
Sbjct: 423 FVCPECSKKFKRSEHLRRHI-----RSLHTSEKP--FVC-ICGKRFSRRDNLRQHERLH 473


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +1

Query: 505 LQSKPCKILK--YACPH--CSAVYENSKSLHAHMKIHKPKQDNNAEAPLTYECELCCTVF 672
           ++SK  +  K  + CP+  C   Y     L  H++ H      + E P   +   C   F
Sbjct: 11  IESKNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTH------SNERPFVCDYTGCSKAF 64

Query: 673 STNKSLKLHKRMH 711
                LK+HKR H
Sbjct: 65  YRKSHLKIHKRCH 77


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +1

Query: 604 KPKQDN-NAEAPLTYECELCCTVFSTNKSLKLHKRMHDPQKARPIELP 744
           KP +   N +AP  Y+C LC   F   +    H R H  +K      P
Sbjct: 12  KPSRSTKNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFP 59


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 553 SAVYENSKSLHAHMKIHKPKQDNNA--EAPLTYECELCCTVFSTNKSLKLHKRMHDPQK 723
           S+V  NSK + +       K+D NA  +    Y CE C   F+  + LK H R H  +K
Sbjct: 41  SSVTSNSKPVASSTAA---KKDPNAPPQKVKQYVCETCTRAFARLEHLKRHIRSHTNEK 96


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 535 YACPHCSAVYENSKSLHAHMKIHKPKQDN 621
           + CPHCS+ +  S  L+ H+     KQ++
Sbjct: 47  FICPHCSSSFTRSDVLNRHVNQKHVKQND 75


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 532 KYACPH--CSAVYENSKSLHAHMKIHKPKQDNNAEAPLTYECELCCTVFSTNKSLKLHKR 705
           KY C +  C+       ++ +H++ H       ++ P  Y C+LC   F  +  LK H R
Sbjct: 442 KYVCLYNGCNKRIARKYNVESHIQTHL------SDRP--YRCDLCKAGFVRHHDLKRHLR 493

Query: 706 MHD 714
           +H+
Sbjct: 494 IHE 496


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 601 HKPKQDNNAEAPLTYECELCCTVFSTNKSLKLHKRMHDPQK 723
           H      ++ A + Y C  C   FS   SLK+H   H  ++
Sbjct: 454 HTGSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHTGER 494


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
 Frame = -2

Query: 183  FVCLAH----FHLQFALGHMLIYFLLHLL-VPVLSKVFETVFLKRLKP 55
            FVC A     F   F LGH+L++F+L ++ +P + + + +V L  L+P
Sbjct: 1805 FVCKAIELNLFATDFFLGHLLLFFMLPVICIPYIDR-WHSVLLFWLRP 1851


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/59 (25%), Positives = 20/59 (33%)
 Frame = +1

Query: 535 YACPHCSAVYENSKSLHAHMKIHKPKQDNNAEAPLTYECELCCTVFSTNKSLKLHKRMH 711
           Y CP C  V+   +    H++ H        E P       C   F+    L  H R H
Sbjct: 4   YECPFCKRVFHRQEHQVRHIRSH------TGEKPFECSYPSCKKRFTRRDELIRHVRTH 56


>SPAC959.10 |sen15||tRNA-splicing endonuclease subunit
           Sen15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 419 LPLYGKQGAYPAFLLPLYFQDLQSIQFLT 333
           +P+ G+      ++LPLY Q+  SI+FL+
Sbjct: 59  IPVNGQLKDKLQYVLPLYLQETISIEFLS 87


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 461 YYCKSCMIYVPNINDFNRNHARS 529
           YYCK C I+V +     R+H ++
Sbjct: 11  YYCKYCQIFVKDTPFARRSHEQT 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,200,044
Number of Sequences: 5004
Number of extensions: 67070
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)