Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021025
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 97 2e-21
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.51
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 2.1
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb... 27 2.7
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 27 3.6
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 6.3
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.4
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 25 8.4
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 97.1 bits (231), Expect = 2e-21
Identities = 44/72 (61%), Positives = 58/72 (80%)
Frame = +3
Query: 510 LVGGSVPVFDEFVLCLGLLNKIISLDEISGVLICEAGCILESLDTYVRERNLIMPLDLGA 689
LVGGSVPVFDE VL LGL+N+I + DEISGV+ ++G ILE+ D ++ E+ + PLDLGA
Sbjct: 132 LVGGSVPVFDEIVLNLGLMNQIHTFDEISGVITLDSGVILENADNFLAEKGYMFPLDLGA 191
Query: 690 KGTCQIGGNAST 725
KG+CQ+GG A+T
Sbjct: 192 KGSCQVGGCAAT 203
Score = 82.6 bits (195), Expect = 5e-17
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 7/84 (8%)
Frame = +1
Query: 277 QFGTVQESDINYFKSILSEERVL-------TDENDVLPFNIDWIKNCRGQSKVVLKPRST 435
++ + E D+ FKSI+ ++ L TD D+ FNIDW+ RG++++ LKP++T
Sbjct: 47 KYAKLSEQDVQVFKSIIGKDGSLIDGLDKSTDPADLDAFNIDWMNKYRGKTQLALKPKTT 106
Query: 436 EEVSKIIKYCNDKHLAVCPQGGNT 507
++VS+I+KYCN K LAV PQGGNT
Sbjct: 107 QQVSEILKYCNQKKLAVVPQGGNT 130
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.51
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 286 TVQESDINYFKSILSEERVLTDENDV---LPFNIDWIKNCRGQSKVVLKPRSTEEVSKII 456
T+QE D S + E L D++ + L NI+ + N + K +K STE+ S+I+
Sbjct: 1517 TIQELDHEITASKNNYEGKLNDKDSIIRDLSENIEQLNNLLAEEKSAVKRLSTEKESEIL 1576
Query: 457 KY 462
++
Sbjct: 1577 QF 1578
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 710 TNLTSTFGP*VQWHY*IALTDICI*TFKDASRFTNENT 597
T +T+ F P +WH+ D + FK A F +E+T
Sbjct: 433 TEVTNAFAPNKRWHF-----DTLLRVFKSAGNFVSEST 465
>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 316
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 517 PTSQCSRLADKPPNVCHYNT**FSKPPLCFWVLKQLLTALGNF 389
PT+ S L+ P H N S P W++ QL+TAL +F
Sbjct: 272 PTTSNSSLSGIIPGATH-NVGPKSSPEALKWLINQLITALRSF 313
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 495 RREH*LVGGSVPVFDEFVLCLGLLNKIISLDEISGVLICEAGCILES 635
+RE + G + +L + LL KII ++I+G+++ A ++ +
Sbjct: 89 KREKSYLEGGIFAITSRILVMDLLTKIIPTEKITGIVLLHADRVVST 135
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 552 CLGLLNKIISLDEISGVLICEAGCILESLDTYVRERNLIMPLDLGA 689
CL +LN + +IS + I C + S D ++ I+ L++G+
Sbjct: 643 CLSMLNNENTDIKISSLNIARLLCQMTSSDAFIESAKNILILEMGS 688
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -1
Query: 643 VSKLSRMHPASQMRTPDISSKLIILFRRPRQRTNSSKTGTEPPTSQCSRLADKPPNVCHY 464
V+ S +++ T ++S I P +++S T T PPT+ + PP
Sbjct: 44 VTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTT-SL 102
Query: 463 NT**FSKPP 437
NT + PP
Sbjct: 103 NTTTTTAPP 111
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 449 KLSSIVMTNIWRFVRKAGTL-TGG-RLSAGLR*IRSLSWSSEQNNK 580
KL + N+W+FV +A + GG L+ + L+ + +NNK
Sbjct: 138 KLKDLQQPNVWKFVEEAKVIYVGGFHLTVSPESMLCLAQHANENNK 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,902
Number of Sequences: 5004
Number of extensions: 63356
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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