Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021025
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0627 + 4685077-4685155,4685978-4686336,4686761-4686862,468...    87   2e-17
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339...    34   0.10 
06_03_0208 - 17941468-17941507,17942073-17942148,17943442-179435...    30   1.6  
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644...    30   1.6  
01_03_0038 + 11862743-11862884,11863145-11863704,11863733-118637...    30   2.2  
03_05_0192 + 21809251-21809413,21809553-21809720,21809858-21810120     29   5.0  

>07_01_0627 +
           4685077-4685155,4685978-4686336,4686761-4686862,
           4687528-4687598,4687871-4687989,4688327-4688422,
           4688527-4688636,4688734-4688814,4689124-4689224,
           4689663-4689771,4689971-4690076,4690140-4690225,
           4690324-4690449,4690816-4690902
          Length = 543

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 37/76 (48%), Positives = 53/76 (69%)
 Frame = +1

Query: 280 FGTVQESDINYFKSILSEERVLTDENDVLPFNIDWIKNCRGQSKVVLKPRSTEEVSKIIK 459
           +  +   D++YFKSIL +  V+ DE+ V   N+DW+   +G S+++L P+ST EVSKI+ 
Sbjct: 93  YSVLNSDDVSYFKSILGDSGVVQDEDRVSVANMDWMGKYKGSSQLLLLPKSTAEVSKILS 152

Query: 460 YCNDKHLAVCPQGGNT 507
           YCN + LAV PQGGNT
Sbjct: 153 YCNSRRLAVVPQGGNT 168



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 40/73 (54%), Positives = 49/73 (67%)
 Frame = +3

Query: 510 LVGGSVPVFDEFVLCLGLLNKIISLDEISGVLICEAGCILESLDTYVRERNLIMPLDLGA 689
           LVGGSVPV+DE                ++G+L CEAGC+LE+L +YV  +  IMPLDLGA
Sbjct: 170 LVGGSVPVYDE----------------VNGILTCEAGCVLENLSSYVENKGFIMPLDLGA 213

Query: 690 KGTCQIGGNASTN 728
           KG+C IGGN STN
Sbjct: 214 KGSCHIGGNISTN 226


>07_01_0450 -
           3395644-3395837,3396164-3396190,3396266-3396396,
           3396612-3396691,3397283-3397345,3397588-3397697,
           3398316-3398424,3398783-3398857,3399363-3399459,
           3399622-3399683,3399966-3400026,3400330-3400469,
           3400747-3400839,3401345-3401393,3401534-3401634,
           3401723-3401816,3401904-3402139
          Length = 573

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 412 VVLKPRSTEEVSKIIKYCNDKHLAVCPQGGNT 507
           VV+ PRS +EV KI+  CN   + + P GG T
Sbjct: 139 VVVFPRSQDEVQKIVMACNKYKVPIVPYGGAT 170


>06_03_0208 -
           17941468-17941507,17942073-17942148,17943442-17943514,
           17944023-17944106,17945335-17945481,17945839-17945863,
           17945966-17946420
          Length = 299

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 564 EDQDKERIHRRPALSLPPVSVPALRTNR 481
           ED+  + +HRRP L  PP S PALR  R
Sbjct: 129 EDRAVDGLHRRPLLP-PPASHPALREGR 155


>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
            6448164-6448243,6449045-6449129,6449221-6449312,
            6449388-6449456,6449544-6449580,6449662-6449744,
            6450427-6450873,6450978-6451014,6451101-6451158,
            6451243-6451382,6451610-6451675,6451794-6451908,
            6453261-6453299,6453482-6453543
          Length = 1927

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
 Frame = -1

Query: 730  ALVLALPPI*QVPLAPKSSGIIRLRSRTYVSKLSRMHPASQ---MRTPDISSKLIILFRR 560
            ALV   P +  +P  PK   + RLR+   V +L   HP  +    R PD     ++    
Sbjct: 1728 ALVAITPEVASIP-TPKLKNVSRLRTEHQVYELPDSHPLLEGFNQREPDDPCPYLLSIWT 1786

Query: 559  PRQRTNSSKTGTEPPTSQCSRLADKPPNVCHYNT 458
            P +   S    T+ P S C+  + +   +C  NT
Sbjct: 1787 PGETAQS----TDAPKSVCN--SQENGELCASNT 1814


>01_03_0038 +
           11862743-11862884,11863145-11863704,11863733-11863777,
           11864174-11864563
          Length = 378

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -3

Query: 584 QTYYFVQKTKTKNEFIE--DRH*ASHQSVFPPCGQTAKCLSLQYLIIFETSSVLLGFKTT 411
           QT+   Q   + +E+    DR   S  S+ P C  TA C + Q+L  F T   ++G +  
Sbjct: 138 QTHAIEQNDMSIDEYYSAFDRLMGSLTSMVPAC-TTAACPAHQFLEKFLTYRFVMGVRED 196

Query: 410 FDCPRQFLIQS 378
           FD  R  L+ S
Sbjct: 197 FDSIRTRLLHS 207


>03_05_0192 + 21809251-21809413,21809553-21809720,21809858-21810120
          Length = 197

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = -1

Query: 589 SSKLIILFRRPRQRTNSSKTGTEPPTSQCSRLADKPPNVCHYNT**FSKPPLCFW 425
           S   + L  R  QRT            +  RL   PP+ CH      S PP C+W
Sbjct: 63  SPPTVELANRQSQRTRGVNDALPLSLVRSCRLTPSPPDTCHAPDLILSGPP-CWW 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,457,003
Number of Sequences: 37544
Number of extensions: 381937
Number of successful extensions: 942
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)