Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021025
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.73 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.0  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -1

Query: 220 PYLIANDSITITPQQKHN*FQHLEQISSRITAEIMQH 110
           P + ++    ITP+Q H  + H++ +  +   EIM++
Sbjct: 145 PQMYSSGGEEITPRQSHQSYHHMDSVEYK--PEIMEY 179


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 388 KNCRGQSKVVLKPRSTEEVSKIIKYCNDKHLAVCPQGG 501
           K C    +  L P ST  V   ++ C  +H  VC   G
Sbjct: 85  KYCGIGKECELSPNSTIAVCVCMRKCPRRHRPVCASNG 122


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 724 VLALPPI*QVPLAPKSSGIIRLRSRTYVSKLSRMHPASQMRTP 596
           V   PP  Q P + K SG  R R     + +S++  AS++  P
Sbjct: 390 VACSPPPRQTPPSRKESGRRRRRRTPRYNSVSKIDRASRIVFP 432


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = -2

Query: 723 CWHYHQFDKYLWPLSPVALLDCAHGHM-YLNFQGCIPL 613
           CW   Q ++Y +       +DC  G   + + +GC  L
Sbjct: 557 CWVCDQCEEYEYVYDEYTCMDCGPGKWPHEDKRGCYQL 594


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,115
Number of Sequences: 438
Number of extensions: 4384
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)