Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021025
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36400.2 68417.m05172 FAD linked oxidase family protein low s...   116   1e-26
At4g36400.1 68417.m05171 FAD linked oxidase family protein low s...   116   1e-26
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    40   0.001
At5g49700.1 68418.m06153 DNA-binding protein-related contains Pf...    28   5.5  
At5g56560.1 68418.m07058 F-box family protein contains F-box dom...    28   7.3  
At3g19400.2 68416.m02460 cysteine proteinase, putative non-conse...    27   9.6  
At3g19400.1 68416.m02461 cysteine proteinase, putative non-conse...    27   9.6  

>At4g36400.2 68417.m05172 FAD linked oxidase family protein low
           similarity to SP|Q12627 from Kluyveromyces lactis and
           SP|P32891 from Saccharomyces cerevisiae; contains Pfam
           FAD linked oxidases, C-terminal domain PF02913, Pfam FAD
           binding domain PF01565
          Length = 559

 Score =  116 bits (280), Expect = 1e-26
 Identities = 51/73 (69%), Positives = 63/73 (86%)
 Frame = +3

Query: 510 LVGGSVPVFDEFVLCLGLLNKIISLDEISGVLICEAGCILESLDTYVRERNLIMPLDLGA 689
           LVGGSVPVFDE ++ +GL+NKI+S DE+SGVL+CEAGCILE+L T++  +  IMPLDLGA
Sbjct: 169 LVGGSVPVFDEVIVNVGLMNKILSFDEVSGVLVCEAGCILENLATFLDTKGFIMPLDLGA 228

Query: 690 KGTCQIGGNASTN 728
           KG+C IGGN STN
Sbjct: 229 KGSCHIGGNVSTN 241



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 38/95 (40%), Positives = 62/95 (65%)
 Frame = +1

Query: 223 CFTSTTTTLFGKYNVKRKQFGTVQESDINYFKSILSEERVLTDENDVLPFNIDWIKNCRG 402
           CF S+  +L  +  +    F ++   D++YFK IL E+ V+ D+  +   N DW+   +G
Sbjct: 77  CFGSSAASLIQRNPL----FSSLDSKDVSYFKEILGEKNVVEDKERLETANTDWMHKYKG 132

Query: 403 QSKVVLKPRSTEEVSKIIKYCNDKHLAVCPQGGNT 507
            SK++L P++T+EVS+I++YC+ + LAV PQGGNT
Sbjct: 133 SSKLMLLPKNTQEVSQILEYCDSRRLAVVPQGGNT 167


>At4g36400.1 68417.m05171 FAD linked oxidase family protein low
           similarity to SP|Q12627 from Kluyveromyces lactis and
           SP|P32891 from Saccharomyces cerevisiae; contains Pfam
           FAD linked oxidases, C-terminal domain PF02913, Pfam FAD
           binding domain PF01565
          Length = 559

 Score =  116 bits (280), Expect = 1e-26
 Identities = 51/73 (69%), Positives = 63/73 (86%)
 Frame = +3

Query: 510 LVGGSVPVFDEFVLCLGLLNKIISLDEISGVLICEAGCILESLDTYVRERNLIMPLDLGA 689
           LVGGSVPVFDE ++ +GL+NKI+S DE+SGVL+CEAGCILE+L T++  +  IMPLDLGA
Sbjct: 169 LVGGSVPVFDEVIVNVGLMNKILSFDEVSGVLVCEAGCILENLATFLDTKGFIMPLDLGA 228

Query: 690 KGTCQIGGNASTN 728
           KG+C IGGN STN
Sbjct: 229 KGSCHIGGNVSTN 241



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 38/95 (40%), Positives = 62/95 (65%)
 Frame = +1

Query: 223 CFTSTTTTLFGKYNVKRKQFGTVQESDINYFKSILSEERVLTDENDVLPFNIDWIKNCRG 402
           CF S+  +L  +  +    F ++   D++YFK IL E+ V+ D+  +   N DW+   +G
Sbjct: 77  CFGSSAASLIQRNPL----FSSLDSKDVSYFKEILGEKNVVEDKERLETANTDWMHKYKG 132

Query: 403 QSKVVLKPRSTEEVSKIIKYCNDKHLAVCPQGGNT 507
            SK++L P++T+EVS+I++YC+ + LAV PQGGNT
Sbjct: 133 SSKLMLLPKNTQEVSQILEYCDSRRLAVVPQGGNT 167


>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +1

Query: 412 VVLKPRSTEEVSKIIKYCNDKHLAVCPQGGNT 507
           VV+ PRS EEVSKI+K CN+  + + P GG T
Sbjct: 148 VVVFPRSEEEVSKILKSCNEYKVPIVPYGGAT 179


>At5g49700.1 68418.m06153 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 276

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 640 SKLSRMHPASQMRTPDISSKLIILFRRPRQRTNSSKTGTEPP 515
           S  S  H +S + TP +    I + RRPR R   SK   +PP
Sbjct: 32  SLTSHFHLSSTV-TPTVDDSSIEVVRRPRGRPPGSKNKPKPP 72


>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 607

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 72  LRIKLFYKQIRRECCIISAVILEEI 146
           LRI LF K +   CC+ S + L+E+
Sbjct: 110 LRIDLFGKTLELPCCLCSCITLKEL 134


>At3g19400.2 68416.m02460 cysteine proteinase, putative
           non-consensus AT acceptor site at exon 3; contains
           similarity to cysteine protease CYP1 GI:2828252, TDI-65
           GI:5726641 from [Lycopersicon esculentum]
          Length = 290

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 316 KSILSEERVLTDENDVLPFNIDWIKN 393
           K  +  ER L  E DVLP  +DW  N
Sbjct: 114 KDSVKTERYLYKEGDVLPDEVDWRAN 139


>At3g19400.1 68416.m02461 cysteine proteinase, putative
           non-consensus AT acceptor site at exon 3; contains
           similarity to cysteine protease CYP1 GI:2828252, TDI-65
           GI:5726641 from [Lycopersicon esculentum]
          Length = 362

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 316 KSILSEERVLTDENDVLPFNIDWIKN 393
           K  +  ER L  E DVLP  +DW  N
Sbjct: 114 KDSVKTERYLYKEGDVLPDEVDWRAN 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,307,984
Number of Sequences: 28952
Number of extensions: 326433
Number of successful extensions: 833
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)