Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021024
         (755 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DVH1 Cluster: PHD-finger family protein; n=1; Trichom...    35   2.5  

>UniRef50_A2DVH1 Cluster: PHD-finger family protein; n=1;
           Trichomonas vaginalis G3|Rep: PHD-finger family protein
           - Trichomonas vaginalis G3
          Length = 741

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -1

Query: 542 VCKKCLRLPKISKKLCTTXNV--LFCKCAKNACYSLVRKYLCSCKFLLYKFVKMTGFEVT 369
           +C  C R     + LC       L C+C KN  Y++       CK  L+K  +  GF + 
Sbjct: 300 ICVNCPRASSTEQFLCPFCQAKRLRCRCKKNKSYNIPIVQCSHCKLYLHKQCEGLGFGII 359

Query: 368 TKYF 357
            K F
Sbjct: 360 PKPF 363


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,832,687
Number of Sequences: 1657284
Number of extensions: 9998402
Number of successful extensions: 22037
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 21091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22029
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)