Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021024
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81595-4|CAB04751.1|   91|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z77132-4|CAB00862.3|  536|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF083225-1|AAD03683.1|  536|Caenorhabditis elegans nuclear recep...    28   8.2  

>Z81595-4|CAB04751.1|   91|Caenorhabditis elegans Hypothetical
           protein T22H2.4 protein.
          Length = 91

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -1

Query: 542 VCKKCLRLPKISKKLC--TTXNV-LFCKCAKNACYSLVRKYLCSCKF 411
           +CKKC ++ KI  K+C     NV   CK     C    +K L   KF
Sbjct: 8   MCKKCAKMCKICAKVCKKCAKNVQKKCKKCGKMCKKCAKKCLKKSKF 54


>Z77132-4|CAB00862.3|  536|Caenorhabditis elegans Hypothetical
           protein F54D1.4 protein.
          Length = 536

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 361 YLVVTSNPVIFTNLYNKNLQLHKYFLTKL*HAFFAHLQNKTLXVVHNFL 507
           Y+V+++   + +N  N++L L +  L++L      H +NKT     N L
Sbjct: 287 YIVLSAESTVLSNSLNESLSLARENLSELLFKVIKHSRNKTSISAANSL 335


>AF083225-1|AAD03683.1|  536|Caenorhabditis elegans nuclear receptor
           NHR-7 protein.
          Length = 536

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 361 YLVVTSNPVIFTNLYNKNLQLHKYFLTKL*HAFFAHLQNKTLXVVHNFL 507
           Y+V+++   + +N  N++L L +  L++L      H +NKT     N L
Sbjct: 287 YIVLSAESTVLSNSLNESLSLARENLSELLFKVIKHSRNKTSISAANSL 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,880,295
Number of Sequences: 27780
Number of extensions: 265047
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)