Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021023
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans AP...   143   1e-34
AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans AP...   143   1e-34
Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical p...    45   4e-05
U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans APB-1
           protein, isoform c protein.
          Length = 827

 Score =  143 bits (346), Expect = 1e-34
 Identities = 65/84 (77%), Positives = 79/84 (94%)
 Frame = +1

Query: 253 ELMEMVSADTELVSTLSRKLAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVF 432
           +L++M+ AD++ ++ L++KLAPP+VTLLSAEPE+QYVALRNINL+VQKRPDILK EMKVF
Sbjct: 262 KLIDMMPADSDFITQLTKKLAPPMVTLLSAEPEIQYVALRNINLIVQKRPDILKQEMKVF 321

Query: 433 FVKYNDPIYVKLEKLDIMIRLASQ 504
           FVKYNDPIYVK+EKLDIMIRLA Q
Sbjct: 322 FVKYNDPIYVKMEKLDIMIRLAQQ 345



 Score =  122 bits (295), Expect = 2e-28
 Identities = 59/84 (70%), Positives = 70/84 (83%)
 Frame = +2

Query: 2   AALSEINEASVSGRPLVEMNAPTINKLLTALNECTEWGQVFILDALSNYSPRDAREAHSI 181
           AAL+E+NE       ++E+N+  +NKLLTALNECTEWGQVFILDAL+ Y+PRD RE  +I
Sbjct: 182 AALTEMNEQQT----VIEVNSQMVNKLLTALNECTEWGQVFILDALAGYTPRDERETQNI 237

Query: 182 CERITPRLAHANAAVVLSAVKVLM 253
           CERI+PRLAHANAAVVLS VKVLM
Sbjct: 238 CERISPRLAHANAAVVLSTVKVLM 261



 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 34/40 (85%), Positives = 38/40 (95%)
 Frame = +3

Query: 504 SHIAQVLGELKEYATEVDVDFVRKAVRAIGRCAIKVEPSA 623
           ++IAQVL ELKEYATEVDVDFVRK+VRAIGRCAIKVE S+
Sbjct: 346 NNIAQVLSELKEYATEVDVDFVRKSVRAIGRCAIKVEASS 385


>AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans APB-1
           protein, isoform a protein.
          Length = 955

 Score =  143 bits (346), Expect = 1e-34
 Identities = 65/84 (77%), Positives = 79/84 (94%)
 Frame = +1

Query: 253 ELMEMVSADTELVSTLSRKLAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVF 432
           +L++M+ AD++ ++ L++KLAPP+VTLLSAEPE+QYVALRNINL+VQKRPDILK EMKVF
Sbjct: 262 KLIDMMPADSDFITQLTKKLAPPMVTLLSAEPEIQYVALRNINLIVQKRPDILKQEMKVF 321

Query: 433 FVKYNDPIYVKLEKLDIMIRLASQ 504
           FVKYNDPIYVK+EKLDIMIRLA Q
Sbjct: 322 FVKYNDPIYVKMEKLDIMIRLAQQ 345



 Score =  122 bits (295), Expect = 2e-28
 Identities = 59/84 (70%), Positives = 70/84 (83%)
 Frame = +2

Query: 2   AALSEINEASVSGRPLVEMNAPTINKLLTALNECTEWGQVFILDALSNYSPRDAREAHSI 181
           AAL+E+NE       ++E+N+  +NKLLTALNECTEWGQVFILDAL+ Y+PRD RE  +I
Sbjct: 182 AALTEMNEQQT----VIEVNSQMVNKLLTALNECTEWGQVFILDALAGYTPRDERETQNI 237

Query: 182 CERITPRLAHANAAVVLSAVKVLM 253
           CERI+PRLAHANAAVVLS VKVLM
Sbjct: 238 CERISPRLAHANAAVVLSTVKVLM 261



 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 34/40 (85%), Positives = 38/40 (95%)
 Frame = +3

Query: 504 SHIAQVLGELKEYATEVDVDFVRKAVRAIGRCAIKVEPSA 623
           ++IAQVL ELKEYATEVDVDFVRK+VRAIGRCAIKVE S+
Sbjct: 346 NNIAQVLSELKEYATEVDVDFVRKSVRAIGRCAIKVEASS 385


>Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical
           protein R11A5.1b protein.
          Length = 896

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 25/67 (37%), Positives = 36/67 (53%)
 Frame = +1

Query: 307 KLAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIM 486
           ++A  LV LL    E QYV L NI  + ++ P +    +K FFV+  D   VK  KL ++
Sbjct: 277 QIARALVRLLRGPRETQYVVLTNIATICERNPTMFDPFLKSFFVRSCDSSLVKKLKLHVL 336

Query: 487 IRLASQA 507
             L S+A
Sbjct: 337 TSLVSEA 343



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 531 LKEYATEVDV-DFVRKAVRAIGRCAIKV 611
           L+E  T V + D    AV AIGRCA++V
Sbjct: 349 LRELQTYVHMSDLASPAVEAIGRCAVRV 376


>U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical
           protein T17H7.1 protein.
          Length = 682

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 491 DWLPKPHSPGARGTEGVCHRSGRGLRPE---GRQGYR 592
           D+ P+   PG RG+ G   R GRG  P+   GRQG R
Sbjct: 382 DFGPQDDFPGRRGSGGPGGRGGRGQGPDFGPGRQGGR 418



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 491 DWLPKPHSPGARGTEGVCHRSGRGLRPE 574
           D+ P+   PG RG+ G   R GRG  P+
Sbjct: 355 DFEPQDDFPGRRGSGGPGRRGGRGQGPD 382


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
           protein T28C6.9 protein.
          Length = 1861

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 259 MEMVSADTELVSTLSRKLAPPLVTLLSAEPE--VQYV-ALRNINLVVQKRP 402
           ++  +A+  L STLS   APPL T  S+EP    Q V  L  I L+ Q  P
Sbjct: 807 LQAANAEVPLTSTLSATTAPPL-TSESSEPSQFAQLVDGLMTILLISQNSP 856


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 506 PHSPGARGTEGVCHRSGRGLRPEGRQGYRQMRHQG 610
           PH PG  G  G  H      R   R G+    H G
Sbjct: 388 PHCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHG 422


>Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical
           protein R11A5.1a protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 531 LKEYATEVDV-DFVRKAVRAIGRCAIKV 611
           L+E  T V + D    AV AIGRCA++V
Sbjct: 359 LRELQTYVHMSDLASPAVEAIGRCAVRV 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,297,542
Number of Sequences: 27780
Number of extensions: 219794
Number of successful extensions: 748
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)