Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021022
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1698 - 35458500-35458547,35458919-35458988,35459626-354597... 59 5e-09
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 48 9e-06
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473... 30 2.5
05_05_0098 + 22373384-22373522,22373566-22373772,22373879-223739... 29 4.4
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 29 4.4
07_03_1452 - 26629219-26629428,26630113-26630280,26630363-266304... 29 5.8
03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700 29 5.8
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 28 7.6
>04_04_1698 -
35458500-35458547,35458919-35458988,35459626-35459759,
35460671-35460712,35460786-35460824
Length = 110
Score = 58.8 bits (136), Expect = 5e-09
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +3
Query: 534 IGERVWVG-GTKPGQIAYIGETQ-FAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGV 707
+G+R V G K G + ++G + G W G+ DEP+GK+DG V G+R+F+CP+ G
Sbjct: 28 VGDRCEVEPGAKRGTVKFVGRAEALGRGFWVGVQYDEPLGKHDGMVKGIRFFECPQGHGA 87
Query: 708 FSR 716
R
Sbjct: 88 IVR 90
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +3
Query: 525 SFIIGERVWVGG--TKPGQIAYIGETQFAPGEWAGIVLDEPI-GKNDGSVAGVRYF-QCP 692
+F +G+RV G + G + Y+G PG+W G+ D G++DGS+AG RYF
Sbjct: 5 AFRLGQRVHAAGDPARVGTVRYLGPVDGHPGDWLGVDWDAGAGGRHDGSLAGRRYFVAAG 64
Query: 693 EKRGVFSRLTRLT 731
E+ F+R T L+
Sbjct: 65 ERSASFARPTALS 77
>01_01_0628 -
4731052-4731601,4731825-4732782,4733143-4733953,
4734038-4734241,4734695-4734802,4735930-4736369,
4736463-4736541
Length = 1049
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 734 SSEPSQSRKHTSFLWTLKITNACH 663
SS+ S H LWTLK N+CH
Sbjct: 502 SSKKEVSIVHNIILWTLKFANSCH 525
>05_05_0098 +
22373384-22373522,22373566-22373772,22373879-22373953,
22374611-22374744,22375189-22375674,22375854-22376621,
22377367-22377594,22378294-22378773
Length = 838
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +2
Query: 260 MIDKIQANVEEVKKKHSAILSAPQSDENGSSTDTLRKLSDDLSRKHLSA--SSTFSATSM 433
++D+I + + V K + + S+PQS+ G +TD + ++D+ KH + F+ S+
Sbjct: 200 LVDRIVVSNKSVAKVY--VRSSPQSNSQGQNTDAI-ITTNDVPSKHTPSRYKYYFNIGSV 256
Query: 434 DALWEK 451
D+ EK
Sbjct: 257 DSFEEK 262
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 670 PATDPSFLPIGSSSTIPAHSPGANCVSPI*AICPGFVPPT 551
P T+P+ P + T+PA +P N V+P P P T
Sbjct: 246 PVTNPTTTPATNPVTVPATNPAMNPVTPGIVTVPSTNPAT 285
>07_03_1452 -
26629219-26629428,26630113-26630280,26630363-26630425,
26630499-26630606,26630820-26630932,26631026-26631322,
26631424-26631502,26631733-26631841,26631927-26631968,
26632467-26632597,26633482-26633623,26633713-26633828,
26634121-26634657
Length = 704
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 404 ASSTFSATSMDAL--WEKHARRLSEL-DYEG 487
A+S S M+AL WE+HARR EL D EG
Sbjct: 594 AASAVSVYQMEALETWEQHARRAYELFDKEG 624
>03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700
Length = 813
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 317 LSAPQSDENGSSTDTLRKLSDDLSRKHLSASSTFSATSMDALWEKHARRLSELD 478
+S S NG S+D L S +L R +S + + T + L H R S+++
Sbjct: 707 ISRKNSGNNGISSDILVNASTELVRTKVSTKTLYYLTKIWLLKNAHERDASDMN 760
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 587 DISNLSRFRTAYPNTFTNNEAISVLCYITLWSEDLRSPVR 468
++ NL R YPN F + E + ++ L++ D+R R
Sbjct: 623 NVENLMRLAKLYPNDFNSGELRDLRHHLCLYTADVREDDR 662
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,931,626
Number of Sequences: 37544
Number of extensions: 404528
Number of successful extensions: 1197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -