Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021022
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-3|CAB01212.1|  229|Caenorhabditis elegans Hypothetical pr...    75   5e-14
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    66   3e-11
Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical pr...    46   3e-05
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    46   3e-05
AF047659-15|AAC04426.1|  493|Caenorhabditis elegans Hypothetical...    41   0.001
Z83230-8|CAC42303.1|  291|Caenorhabditis elegans Hypothetical pr...    40   0.003
Z83230-7|CAB05747.1|  291|Caenorhabditis elegans Hypothetical pr...    40   0.003
AF047885-1|AAD10538.1|  291|Caenorhabditis elegans UNC-64 syntax...    40   0.003
AB008844-1|BAA23586.1|  291|Caenorhabditis elegans syntaxin C pr...    40   0.003
AB008843-1|BAA23585.1|  291|Caenorhabditis elegans syntaxin B pr...    40   0.003
AB008842-1|BAA23584.1|  291|Caenorhabditis elegans syntaxin A pr...    40   0.003
Z77136-2|CAB00884.3|  670|Caenorhabditis elegans Hypothetical pr...    31   0.74 
Z68008-6|CAA92001.1|  362|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U61953-9|AAK82910.1|  748|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z82284-5|CAB05291.1|  418|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>Z77663-3|CAB01212.1|  229|Caenorhabditis elegans Hypothetical
           protein F53F4.3 protein.
          Length = 229

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
 Frame = +3

Query: 513 EDTDSFIIGER--VWVGG--TKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRY 680
           E   + ++G R  V VG    + G++AY+G T+F  G W G+  DEP+GKNDGSVAGVRY
Sbjct: 141 EAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRY 200

Query: 681 FQCPEKRGVFSR 716
           F C  K G F R
Sbjct: 201 FDCDPKYGGFVR 212


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
           protein ZK593.5 protein.
          Length = 1326

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 29/62 (46%), Positives = 40/62 (64%)
 Frame = +3

Query: 525 SFIIGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRG 704
           SF IG RV       G++ + G+TQFA G+W G++LD   GKN+G+V  V+YF+C    G
Sbjct: 2   SFEIGTRVKTSSGN-GRVVFCGQTQFAEGDWVGVILDTATGKNNGTVQNVQYFECEPNFG 60

Query: 705 VF 710
           VF
Sbjct: 61  VF 62


>Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical
           protein M01A8.2b protein.
          Length = 869

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/66 (37%), Positives = 34/66 (51%)
 Frame = +3

Query: 534 IGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGVFS 713
           IG  V V     G + Y+G      G + GI L EP GK+DG+  GV YF      G+F+
Sbjct: 21  IGRLVDVVNVGKGFLRYVGPIHGKDGMFCGIELLEPNGKHDGTFQGVSYFIATPYHGIFA 80

Query: 714 RLTRLT 731
            + R+T
Sbjct: 81  PIFRVT 86


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/66 (37%), Positives = 34/66 (51%)
 Frame = +3

Query: 534 IGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGVFS 713
           IG  V V     G + Y+G      G + GI L EP GK+DG+  GV YF      G+F+
Sbjct: 21  IGRLVDVVNVGKGFLRYVGPIHGKDGMFCGIELLEPNGKHDGTFQGVSYFIATPYHGIFA 80

Query: 714 RLTRLT 731
            + R+T
Sbjct: 81  PIFRVT 86


>AF047659-15|AAC04426.1|  493|Caenorhabditis elegans Hypothetical
           protein K07H8.1 protein.
          Length = 493

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 534 IGERVWVGGTKPGQIAYIGETQ-FAPGEWAGIVLDEPI-GKNDGSVAGVRYFQCPEKRG 704
           IG+RV +   +   + YIGE   +    W G+  D+P  GK+DG V G RYFQ     G
Sbjct: 3   IGQRVRIN-FEVATVRYIGEVDGYGSQRWVGLEWDDPTRGKHDGIVRGKRYFQTRHPNG 60


>Z83230-8|CAC42303.1|  291|Caenorhabditis elegans Hypothetical
           protein F56A8.7b protein.
          Length = 291

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +2

Query: 254 REMIDKIQANVEEVKKKHSAILSAPQSDE 340
           R  +D I  NVEEVKKKHSAILS P +D+
Sbjct: 43  RGSVDIIANNVEEVKKKHSAILSNPVNDQ 71


>Z83230-7|CAB05747.1|  291|Caenorhabditis elegans Hypothetical
           protein F56A8.7a protein.
          Length = 291

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +2

Query: 254 REMIDKIQANVEEVKKKHSAILSAPQSDE 340
           R  +D I  NVEEVKKKHSAILS P +D+
Sbjct: 43  RGSVDIIANNVEEVKKKHSAILSNPVNDQ 71


>AF047885-1|AAD10538.1|  291|Caenorhabditis elegans UNC-64 syntaxin
           class B protein.
          Length = 291

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +2

Query: 254 REMIDKIQANVEEVKKKHSAILSAPQSDE 340
           R  +D I  NVEEVKKKHSAILS P +D+
Sbjct: 43  RGSVDIIANNVEEVKKKHSAILSNPVNDQ 71


>AB008844-1|BAA23586.1|  291|Caenorhabditis elegans syntaxin C
           protein.
          Length = 291

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +2

Query: 254 REMIDKIQANVEEVKKKHSAILSAPQSDE 340
           R  +D I  NVEEVKKKHSAILS P +D+
Sbjct: 43  RGSVDIIANNVEEVKKKHSAILSNPVNDQ 71


>AB008843-1|BAA23585.1|  291|Caenorhabditis elegans syntaxin B
           protein.
          Length = 291

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +2

Query: 254 REMIDKIQANVEEVKKKHSAILSAPQSDE 340
           R  +D I  NVEEVKKKHSAILS P +D+
Sbjct: 43  RGSVDIIANNVEEVKKKHSAILSNPVNDQ 71


>AB008842-1|BAA23584.1|  291|Caenorhabditis elegans syntaxin A
           protein.
          Length = 291

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +2

Query: 254 REMIDKIQANVEEVKKKHSAILSAPQSDE 340
           R  +D I  NVEEVKKKHSAILS P +D+
Sbjct: 43  RGSVDIIANNVEEVKKKHSAILSNPVNDQ 71


>Z77136-2|CAB00884.3|  670|Caenorhabditis elegans Hypothetical
           protein ZC376.2 protein.
          Length = 670

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 141 TCPSSSFTENHAPSKRFFSLHNPIQRYFSNKRH*TKGHEPTFTSLKK 1
           TC S SF E+ +PS   F + N +    S+  H   G + TF    K
Sbjct: 534 TCGSKSFKEHFSPSVDIFIIGNLLNPIMSHLNHNETGPDKTFEQFDK 580


>Z68008-6|CAA92001.1|  362|Caenorhabditis elegans Hypothetical
           protein R08B4.2 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 338 ENGSSTDTLRKLSDDLSRKHLSASSTFSATSMDALWEKHAR 460
           ENGS +D      D+  RK     +TFSA  +D L +  AR
Sbjct: 98  ENGSPSDGTNSPDDNGKRKQRRYRTTFSAFQLDELEKVFAR 138


>U61953-9|AAK82910.1|  748|Caenorhabditis elegans Hypothetical
           protein R08C7.10b protein.
          Length = 748

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +2

Query: 293 VKKKHSAILSAPQSDENGSSTDTLRKLSDDLSRKHLSASSTFS 421
           V +  S  LS P++   G++ +TL+ LSDD   + LS SST S
Sbjct: 53  VNQLSSPPLSLPETLSEGNA-ETLQNLSDDSEPEMLSQSSTSS 94


>Z82284-5|CAB05291.1|  418|Caenorhabditis elegans Hypothetical
           protein T27E7.6 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +2

Query: 254 REMIDKIQANVEEVKKKHSAILSAPQSDENGSSTDTLRKLSDDL 385
           REM +++  N +E +KKH+AI+   + +  GS  D L+  S+ +
Sbjct: 196 REM-NEMAKNHQEERKKHNAIIGQKKMEMIGSKRDQLKIESEKI 238


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = -2

Query: 695 LWTLKITNACH*SIVFTN-----WLVEYYPSPLSGSKLRFSDIS-NLSRFRTAYPNTFTN 534
           LW++K TNA   ++ F N      +  YY      S+  F+  S ++++F       FT 
Sbjct: 310 LWSIKTTNANQLAVAFHNGGSNIHIARYYDGTKFNSRGAFAATSPSMTQFHNLNTPFFTR 369

Query: 533 NEAISVLCYITLWS 492
           N   ++  Y T+ S
Sbjct: 370 NANDTIEIYCTVLS 383


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = -2

Query: 695 LWTLKITNACH*SIVFTN-----WLVEYYPSPLSGSKLRFSDIS-NLSRFRTAYPNTFTN 534
           LW++K TNA   ++ F N      +  YY      S+  F+  S ++++F       FT 
Sbjct: 310 LWSIKTTNANQLAVAFHNGGSNIHIARYYDGTKFNSRGAFAATSPSMTQFHNLNTPFFTR 369

Query: 533 NEAISVLCYITLWS 492
           N   ++  Y T+ S
Sbjct: 370 NANDTIEIYCTVLS 383


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = -2

Query: 695 LWTLKITNACH*SIVFTN-----WLVEYYPSPLSGSKLRFSDIS-NLSRFRTAYPNTFTN 534
           LW++K TNA   ++ F N      +  YY      S+  F+  S ++++F       FT 
Sbjct: 310 LWSIKTTNANQLAVAFHNGGSNIHIARYYDGTKFNSRGAFAATSPSMTQFHNLNTPFFTR 369

Query: 533 NEAISVLCYITLWS 492
           N   ++  Y T+ S
Sbjct: 370 NANDTIEIYCTVLS 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,113,099
Number of Sequences: 27780
Number of extensions: 349034
Number of successful extensions: 1075
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)