Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021022
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.21 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.21 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   4.4  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    22   5.8  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    22   5.8  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    22   5.8  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    22   5.8  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    22   5.8  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    22   5.8  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    22   5.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.8  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   5.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.8  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   5.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 398  LSASSTFSATSMDALWEKHARRLSELDYEGLQTTA 502
            L++S T S+  +DA   KH R +S+  Y G  +T+
Sbjct: 1792 LTSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTS 1826


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 398  LSASSTFSATSMDALWEKHARRLSELDYEGLQTTA 502
            L++S T S+  +DA   KH R +S+  Y G  +T+
Sbjct: 1788 LTSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTS 1822


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 622 PAHSPGANCVSPI*AICPGFVPPTQTRSPIMKLSVSSVISRCG 494
           P+H   A C   I     G  PP +   P+M L  SS + + G
Sbjct: 472 PSHMYRAVC-GRIENTIQGLPPPYRLNKPLMSLITSSEVRQPG 513


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 384 YLENTYQPAVRSALLRWMLFGRNTRVVSA 470
           ++  TY P++   +L W+ F  N    SA
Sbjct: 244 FVFQTYLPSILIVMLSWVSFWINHEATSA 272


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 117 PGSRHIGPLTPFPPRFIPPDMYR 139


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 365 PGSRHIGPLTPFPPRFIPPDMYR 387


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 350 PGSRHIGPLTPFPPRFIPPDMYR 372


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 610 PGANCVSPI*AICPGFVPPTQTR 542
           PG+  + P+    P F+PP   R
Sbjct: 366 PGSRHIGPLTPFPPRFIPPDMYR 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,954
Number of Sequences: 438
Number of extensions: 3886
Number of successful extensions: 31
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)