Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021021
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    29   0.77 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.77 
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   2.3  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   2.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   3.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.4  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   9.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   9.4  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 380 ELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGN-NTTPSYNI 514
           +LQ QQ+   E+    +T +QQ  S    G F  N + NT P+ +I
Sbjct: 114 KLQVQQEAQSEVYQRASTNTQQQVSNVSHGNFKPNSSVNTEPNTSI 159


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 342 APQAPPVAPRSPILQPLP 289
           AP APP+ P +PI  PLP
Sbjct: 443 APAAPPLPPSAPIAPPLP 460


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 585  RLTTSIFTDVAESVKSRKRSKQSTSERYSTESSVDPTTTAA---GAKSNYSTAT 737
            R++ S   D ++S KSRKRS+   SE   ++  V     +A   G K+N   AT
Sbjct: 1306 RISKSPGLDSSDSGKSRKRSQSVDSEDAGSKKPVKKIAASASGRGRKTNKPVAT 1359


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 609 DVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITT 752
           + + + K    SK+ TSER   +SSV P+     + S+ S   K + T
Sbjct: 85  ETSSNSKLISASKEITSERKRAKSSVSPSYLTDSSPSDLSVENKVLLT 132


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 585 RLTTSIFTDVAESVKSRKRSKQSTSERYSTESSVDP-TTTAAGAKSNYSTATKSITTA 755
           R+ T+  + ++ SVK    S  S+S    + SSV P ++T   + S+ S+   +++T+
Sbjct: 443 RVQTTTVSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTS 500


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 591 TTSIFTDVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTAT 737
           TT     V E   S +R K ST++ +ST    +PTTTA  + S  S  T
Sbjct: 126 TTGTDDVVYEYHPSSERHK-STNDTWSTNLPTNPTTTAIYSTSGSSNIT 173


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 642 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTA 755
           S  STS   ST SS   T+++  + S+ STA+ S +++
Sbjct: 233 SSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSS 270


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 588 LTTSIFTDVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAV 758
           L TSI T  +  V     S  S +  YST  +   +TT  G+ +  S+   S ++ +
Sbjct: 245 LPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVI 301


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 284 TTGSGCRMGERGATGGAWGARDDASWWPSS---AGELQHQQQ-LNEEIGTSTATTS 439
           TT +G   G   A+GG +G  ++ +  PS+    G   +QQ+      G++T TT+
Sbjct: 291 TTNTGFGSGTNNASGGLFGQNNNTTSTPSTGLFGGSTFNQQKPAFSGFGSTTNTTN 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,320
Number of Sequences: 5004
Number of extensions: 56094
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)