Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021021
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47181| Best HMM Match : Pkinase (HMM E-Value=7.7e-31)               31   0.81 
SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)                 30   1.9  
SB_36422| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)                 30   2.5  
SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)             30   2.5  
SB_8501| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_5333| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         29   4.3  
SB_45545| Best HMM Match : Vicilin_N (HMM E-Value=1.1)                 29   5.7  
SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)                      29   5.7  
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)               29   5.7  
SB_23543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_53176| Best HMM Match : Homeobox (HMM E-Value=0)                    28   7.6  
SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_4141| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_47181| Best HMM Match : Pkinase (HMM E-Value=7.7e-31)
          Length = 801

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 308 GERGATGGAWGARDDASWWPSSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSG 469
           G  G++GG  G  D++   P S+G++  +++ ++E         Q+M S   SG
Sbjct: 350 GGGGSSGGGGGRDDESGKRPLSSGDINMEEECDDEEEEKEEKPDQEMTSVGFSG 403


>SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/67 (25%), Positives = 25/67 (37%)
 Frame = +2

Query: 311 ERGATGGAWGARDDASWWPSSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGN 490
           + G   G    R++         + Q QQQ  ++         QQ   + +S     N N
Sbjct: 14  KNGKINGCKEGREEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHNLSNSSDINNN 73

Query: 491 NTTPSYN 511
           NTT S N
Sbjct: 74  NTTTSNN 80


>SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)
          Length = 365

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 414 ISSFNCCWCCSSPALLGHHEASSRAPQ 334
           IS F+  W C +PA  GHH A +R PQ
Sbjct: 277 ISEFSLRWHCQNPAQGGHHGADAR-PQ 302


>SB_36422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 369 LGHHEASSRAPQAPPVAPRSPILQPLP 289
           L   EA++  P+APP+ P +P+  P+P
Sbjct: 20  LSEAEAAANPPEAPPLPPFAPLPPPVP 46


>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
          Length = 1155

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 361  PRGIVARTPSAPRRAPFTHPTTAACGQPVPLCILSFRGRLR 239
            P G  A+TPS    AP   P T   G+P  + ++ +  R R
Sbjct: 1105 PSGAPAKTPSVAPAAPSPRPLTGLPGRPSWITVIRYAPRYR 1145


>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
          Length = 930

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -3

Query: 427 CTSAYFFI*LLLVLQFTCATWPPRGIVARTPSAPRRAPFTHPTTAACGQPVPLCILS 257
           CTS  FF+  L     TC+   P+   A     P RA  + P+T     P+ LC +S
Sbjct: 300 CTSPTFFVCQLSHRCATCSGPHPQVECASRGRKPNRARSSSPSTKPPKSPIRLCRIS 356


>SB_8501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 543

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 614 DVGEDACCESTPPDEYHHCCRGEASL 537
           D+ +D CC + P +EY HC + E ++
Sbjct: 36  DLPDDWCCRNHPLNEYKHCHKPEQAV 61


>SB_5333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
 Frame = +2

Query: 293 SGCRMGERGATGGAWGA-------RDDASWWPSSAGELQHQQQLNEEIGTS-TATTSQQM 448
           SG ++GER      WG        R +A+W P  +G L  +      +     A+TS +M
Sbjct: 86  SGVKLGERNPRYEEWGHKKPGYEWRPEAAWGPKKSGSLAREPSTVPSLPCDLVASTSAKM 145

Query: 449 YSYKMSG 469
           Y     G
Sbjct: 146 YLASQGG 152


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 428  ATTSQQMYSYKMSGGFTSNGNNTTPS 505
            +TT+ Q+YS+  S  F  NG NT  S
Sbjct: 1931 STTADQLYSFTSSSSFNKNGLNTKVS 1956


>SB_45545| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
          Length = 729

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -2

Query: 392 GAAVHLRYLATTRHRRAHPKRPPS-RPVHPSYNRCLWSTSSFMYFVLSRPFKI 237
           G A H   L   R   +H   PP  RPVHP  +R L    S      SR F +
Sbjct: 377 GEASHRELLG--RMASSHKPGPPGDRPVHPDVSRSLGDVRSHSPLTASRSFPL 427


>SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)
          Length = 127

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 591 TTSIFTDVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITT 752
           TTS  T    +  + K +  +T++  +T ++    TTA   K +  T T + TT
Sbjct: 57  TTSTITTTTTTTTTTKTTTTTTTKTTTTTATTTEITTATRTKGSAITTTTTTTT 110


>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
          Length = 905

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 657 SERYSTESSVDPTTTAAGAKSNYSTATKSITTAV 758
           SE  +TESS  P T  +  KS+ +TAT + T+ V
Sbjct: 565 SEAATTESSTVPQTVVSETKSSTTTATITTTSEV 598


>SB_23543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 869

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
 Frame = +2

Query: 293 SGCRMGERGATGGAWGA-------RDDASWWPSSAGELQHQQQLNEEIGTS-TATTSQQM 448
           SG ++ ER    G WG        R +A+W P  +G L  +Q     +     A TS +M
Sbjct: 365 SGVKLVERNLRYGEWGHKRHGYEWRPEAAWGPKRSGCLAREQSTAPSLPCDLVAATSARM 424

Query: 449 Y 451
           Y
Sbjct: 425 Y 425


>SB_53176| Best HMM Match : Homeobox (HMM E-Value=0)
          Length = 373

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 672 TESSVDPTTTAAGAKSNYSTATKSITTA 755
           T  S DP T AAGA S+ +T T+   TA
Sbjct: 43  TSKSGDPATLAAGAGSSEATRTRRYRTA 70


>SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/75 (22%), Positives = 32/75 (42%)
 Frame = +3

Query: 537 KGSFTSATMVVLIRRCRLTTSIFTDVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAK 716
           + + T+AT          TT+       +      + ++T+   +T ++   TTTAA   
Sbjct: 298 RATTTTATTTEAAATAEATTTATATTTATTTEAAATAEATTTATATTTTAAITTTAATTT 357

Query: 717 SNYSTATKSITTAVA 761
           S  +   ++ TTA A
Sbjct: 358 SEAAATAEATTTATA 372


>SB_4141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/56 (30%), Positives = 35/56 (62%)
 Frame = +3

Query: 576 RRCRLTTSIFTDVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKS 743
           ++  LTT+  T+   + +SR ++ +++++  +TE+S   TTT   A++  + ATKS
Sbjct: 60  QKTTLTTTKNTNRNNNNESRNKTLKTSAKTTTTEASTTTTTTKTLAETT-TAATKS 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,645,109
Number of Sequences: 59808
Number of extensions: 432451
Number of successful extensions: 1754
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)