Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021021
(795 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33320.1 68415.m04084 C2 domain-containing protein low simila... 33 0.22
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 31 0.88
At2g11005.1 68415.m01177 glycine-rich protein 29 3.6
At4g29780.1 68417.m04241 expressed protein 29 4.7
At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden... 29 4.7
At5g10900.1 68418.m01265 calcineurin-like phosphoesterase family... 28 6.2
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 28 6.2
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 28 6.2
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 28 6.2
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 28 6.2
At5g07580.1 68418.m00868 ethylene-responsive element-binding fam... 28 8.2
At5g04290.1 68418.m00422 KOW domain-containing transcription fac... 28 8.2
At2g47060.2 68415.m05880 serine/threonine protein kinase, putati... 28 8.2
At2g47060.1 68415.m05879 serine/threonine protein kinase, putati... 28 8.2
At1g72110.1 68414.m08335 expressed protein 28 8.2
>At2g33320.1 68415.m04084 C2 domain-containing protein low
similarity to splicing coactivator subunit SRm300 [Homo
sapiens] GI:6649242; contains Pfam profile PF00168: C2
domain
Length = 602
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +3
Query: 570 LIRRCRLTTS--IFTDVAESV-KSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATK 740
++RR R TS + +D+ V +SR +++ S S ES PTTT + ++ S TK
Sbjct: 211 MLRRTRSDTSSMVVSDLLSRVERSRVANRKPASALMSAESETVPTTTGHDSVTSDSELTK 270
Query: 741 SITTAV 758
SI A+
Sbjct: 271 SIEYAL 276
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 31.1 bits (67), Expect = 0.88
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 381 SPALLGHHEASSRAPQAPPVAPRSPILQPLP 289
SP G SS +P PPV P PI+ P P
Sbjct: 583 SPPFTGPSPPSSPSPPLPPVIPSPPIVGPTP 613
>At2g11005.1 68415.m01177 glycine-rich protein
Length = 170
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/85 (21%), Positives = 31/85 (36%)
Frame = +2
Query: 287 TGSGCRMGERGATGGAWGARDDASWWPSSAGELQHQQQLNEEIGTSTATTSQQMYSYKMS 466
+G G G+ G +G G+RD SS G + ++ ++ +
Sbjct: 24 SGDGSGSGDGGGSGDGGGSRDSDGSGDSSGGGSGDSGGFGDNSDNNSVSSDSSGGGSRDG 83
Query: 467 GGFTSNGNNTTPSYNIELCLILTQG 541
GG NGN + + +L G
Sbjct: 84 GGSGDNGNTDDGVVALVMSFVLVTG 108
>At4g29780.1 68417.m04241 expressed protein
Length = 540
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 243 KRPRKDKIHKGTG*PQAAVVGWVNGARRGALG-VRATM 353
KRPRKD G G V+G VNG + A G + AT+
Sbjct: 49 KRPRKDDEGGGGGGGGTEVLGAVNGNNKAAFGDILATL 86
>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
identical to SEUSS transcriptional co-regulator
[Arabidopsis thaliana] gi|18033922|gb|AAL57277
Length = 877
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 338 GARDDASWWPSSA--GELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYN 511
G +A++ P ++ G Q Q GT ++SQQ ++ TS+ NN PS N
Sbjct: 666 GRHQNAAYNPPNSPYGGNSVQMQSPSSSGTMVPSSSQQQHNLPTFQSPTSSSNNNNPSQN 725
>At5g10900.1 68418.m01265 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 600
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 356 SWWPSSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYNIEL 520
S+ + LQHQ I ++T QQM+ + GF S G + PS+ + L
Sbjct: 499 SYTVENVPRLQHQI-----ISDGSSTQQQQMWENRTGHGFASMGISNPPSWTVPL 548
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 326 GGAWGARDDASW--WPSSAGELQHQQQLNE 409
GG W AR+D SW P G + QQ+ E
Sbjct: 784 GGYWEAREDGSWVDCPDIFGHIDSDQQMIE 813
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 326 GGAWGARDDASW--WPSSAGELQHQQQLNE 409
GG W AR+D SW P G + QQ+ E
Sbjct: 784 GGYWEAREDGSWVDCPDIFGHIDSDQQMIE 813
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 326 GGAWGARDDASW--WPSSAGELQHQQQLNE 409
GG W AR+D SW P G + QQ+ E
Sbjct: 785 GGYWEAREDGSWVDCPDIFGHIDSDQQMIE 814
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +2
Query: 293 SGCRMGERGA-TGGAWGARDDASWW-PSSAGELQHQQQLNEEI 415
SG R G G GG G R + WW P E QQQ E+
Sbjct: 19 SGRRGGRGGGGRGGGGGGRGEQRWWDPVWRAERLRQQQAEMEV 61
>At5g07580.1 68418.m00868 ethylene-responsive element-binding family
protein contains similarity to ethylene responsive
element binding factor 5 (AtERF5) (Swiss-Prot:O80341)
[Arabidopsis thaliana]; contains Pfam PF00847: AP2
domain
Length = 207
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 339 PQAPPVAPRSPILQPLPVVNQFLYV 265
P P P SP+L P VN+FL V
Sbjct: 46 PHVPKQEPDSPVLDPDSFVNEFLQV 70
>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
family protein
Length = 1493
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +2
Query: 275 NWLTTGSGCRMGERGATGGAWGARDDASWW 364
+W G G++G +WG +DD W
Sbjct: 934 DWGQPNDGSSWGKKGDGAASWGKKDDGGSW 963
>At2g47060.2 68415.m05880 serine/threonine protein kinase, putative
similar to Pto kinase interactor 1 (Pti1)[Lycopersicon
esculentum] gi|3668069|gb|AAC61805
Length = 397
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 363 HHEASSRAPQAPPVAPRSPILQPL 292
HH+AS A + PPV PI P+
Sbjct: 37 HHQASETAQKGPPVVKLQPIEVPI 60
>At2g47060.1 68415.m05879 serine/threonine protein kinase, putative
similar to Pto kinase interactor 1 (Pti1)[Lycopersicon
esculentum] gi|3668069|gb|AAC61805
Length = 365
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 363 HHEASSRAPQAPPVAPRSPILQPL 292
HH+AS A + PPV PI P+
Sbjct: 37 HHQASETAQKGPPVVKLQPIEVPI 60
>At1g72110.1 68414.m08335 expressed protein
Length = 479
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 504 LGVVLFPLDVKPPDILYEYI 445
+G VL PL +KP D ++EY+
Sbjct: 326 IGYVLIPLGMKPQDDVFEYV 345
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,854,621
Number of Sequences: 28952
Number of extensions: 301526
Number of successful extensions: 1032
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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