Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021020
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...   106   3e-24
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    36   0.009
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    35   0.012
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    33   0.050
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    32   0.087
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    30   0.35 
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    29   0.81 
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   2.5  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   4.3  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   5.7  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    25   10.0 

>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score =  106 bits (255), Expect = 3e-24
 Identities = 43/86 (50%), Positives = 64/86 (74%)
 Frame = +3

Query: 252 IGKECKICSRPFTVFRWCPGARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAA 431
           +G+ECKICS+P T+FRW      +  KT+IC  C++ KN CQ+C+LDL++GLPI +RDAA
Sbjct: 40  LGQECKICSKPCTIFRWIKERGQKPGKTQICVGCARYKNCCQSCMLDLQFGLPIALRDAA 99

Query: 432 LKVQDDLPRNEVNKEYYIQNLESQLS 509
           LK+ +  P N++N+E++ QN +  LS
Sbjct: 100 LKLVESGPTNDINREFFAQNQQRLLS 125



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 22/51 (43%), Positives = 30/51 (58%)
 Frame = +1

Query: 163 NRQNWEDADFPILCQTCLGDNPYIRMTKEK*AKNVKYAQDLSQCFDGVLEQ 315
           N+Q WED +FP +C+ CLGDN Y+RMTKE   +  K        F  + E+
Sbjct: 10  NKQEWEDVEFPSICERCLGDNSYVRMTKEPLGQECKICSKPCTIFRWIKER 60


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 539 LKSKGSSDLLVRLARTAPYYKRNR---PHVCSFWVKGECRRGEECPYRHEKPTDPD 697
           LKS+  S+    ++R + Y K ++      C ++ +G C  G +C Y H  P D D
Sbjct: 87  LKSQVKSETRCVISRDSGYTKADKNPGSFFCLYFARGMCSEGSKCEYLHRLPKDTD 142


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 617 VCSFWVKGECRRGEECPYRHE 679
           VC  W++G C++GE+C + HE
Sbjct: 53  VCKHWLRGLCKKGEQCDFLHE 73



 Score = 29.9 bits (64), Expect = 0.46
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 608 RPHVCSFWVKGECRRGEECPYRHEKPTDPDDP 703
           +P  C  ++ G C  G  CP  H K ++P  P
Sbjct: 132 KPRPCPKYLAGFCPLGPNCPDAHPKHSEPPHP 163



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 596 YKRNRPHVCSFWV-KGECRRGEECPYRHEKPT 688
           Y   +   C F+  +G C  GEEC Y H  P+
Sbjct: 74  YNLKKMPPCHFYAERGWCSNGEECLYLHLDPS 105


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 33.1 bits (72), Expect = 0.050
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 602 RNRPHV-CSFWVKGECRRGEECPYRHEKPTD 691
           +N  HV C F+  G C  GE CP+ H   T+
Sbjct: 40  KNLQHVPCKFFRNGTCTAGENCPFSHSLETE 70



 Score = 29.5 bits (63), Expect = 0.61
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 608 RPHVCSFWVKGECRRGEECPYRHEKPTDPDDP 703
           RP +C +++KG C+ G +C   H  P + + P
Sbjct: 71  RP-ICKYFLKGNCKFGPKCALSHALPGNTNLP 101


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 32.3 bits (70), Expect = 0.087
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 620 CSFWVK-GECRRGEECPYRHEKP 685
           CSF+ K G CR GE C  +H KP
Sbjct: 18  CSFYYKIGACRHGERCSRKHVKP 40


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +2

Query: 269 NMLKTFHSVSMVSWSKNAFQENGNMPDLFETEKCLSNMFIGFGIWSANPSERCCIKSSG* 448
           N+LK  HS S+ + S  +   NG    + +TE+  +   +   +   N      I S   
Sbjct: 14  NILKELHSTSIFTDSTTSQLHNGGENSVMDTEESSAIDKLSASLQQVN------ISSPSV 67

Query: 449 PTSK-RS*QGILHTKLGESAVNSDPTQPTNSLKSK 550
           PTS+ R  QG     LG + + S+PT  TN++++K
Sbjct: 68  PTSQSRVTQG---QSLGNTQI-SNPTSKTNNVRAK 98


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 617 VCSFWVKGECRRGEECPYRHEKPTDPDDPLADQNI 721
           VC ++++  CR G  C  +H  P++  +  +  N+
Sbjct: 3   VCKYFLQNRCRYGTNCKNQHTVPSNGQNAFSKVNV 37


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 617 VCSFWVKGECRRGEECPYRHEKP 685
           +C ++ KG C+ G +C   H  P
Sbjct: 69  ICKYFQKGNCKFGSKCALEHVLP 91



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 575 LARTAPYYKRNRPHVCSFWVKGECRRGEECPYRHE 679
           L R +P   ++ P  C F+ +G C  G+ C + H+
Sbjct: 28  LTRPSPKSLQHVP--CKFFRQGTCTSGKNCIFSHD 60


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
 Frame = +2

Query: 290  SVSMVSWSKNAFQENGNMPDLFETEKCLSNMF----------IGFGIWSANPSERCCIKS 439
            S    S SKNAF +   +PDL + +   SN+F          +     ++  S++  +KS
Sbjct: 2573 SKDSASLSKNAFADKFEIPDL-DADVYRSNVFFETLHLQPTRLNISFETSYESDQPAVKS 2631

Query: 440  SG*PTSKRS*QGILHTKLGESAVNSDPTQPTNSLKSKGSSDLLVRLARTAPYYKR 604
            S  PT      GIL + LG   ++  P Q  + L       L     R A +YK+
Sbjct: 2632 SN-PTLDFM-TGILISTLGN--IHDAPVQLNSILLENARGTLSEMANRVASHYKQ 2682


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 596 YKRNRPHVCSFWVKGECRRGEECPYRHE 679
           ++  R  +C  ++ G C + E+C   HE
Sbjct: 228 HEPTRKTICPKFLNGRCNKAEDCNLSHE 255


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 278 KTFHSVSMVSWSKNAFQENGNMPDLFET 361
           K+ H  +M+ +  +A +EN N+ DLFET
Sbjct: 145 KSKHGSNMIHFEASA-KENTNVTDLFET 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,517,061
Number of Sequences: 5004
Number of extensions: 77495
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)