Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021020
(832 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 163 2e-40
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.093
SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.38
SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10) 33 0.38
SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.66
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19) 30 2.0
SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038) 30 2.6
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31) 29 3.5
SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004) 29 4.6
SB_53801| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_58169| Best HMM Match : zf-CCCH (HMM E-Value=0.0035) 28 8.1
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 28 8.1
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 163 bits (395), Expect = 2e-40
Identities = 65/85 (76%), Positives = 81/85 (95%)
Frame = +3
Query: 255 GKECKICSRPFTVFRWCPGARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAAL 434
G+ECKIC+RPFT+FRWCPGARMRFKKTEICQTCSKLKN+CQTCLLDLEYGLP+QVRD +L
Sbjct: 113 GRECKICARPFTIFRWCPGARMRFKKTEICQTCSKLKNICQTCLLDLEYGLPVQVRDKSL 172
Query: 435 KVQDDLPRNEVNKEYYIQNLESQLS 509
++D++P+++VNKEYY QN+E +L+
Sbjct: 173 GLKDEMPKSDVNKEYYTQNVERELA 197
Score = 153 bits (371), Expect = 2e-37
Identities = 65/85 (76%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
Frame = +2
Query: 509 NSDPTQPTNSLKSKGS--SDLLVRLARTAPYYKRNRPHVCSFWVKGECRRGEECPYRHEK 682
+SD T P +L+ K + SDLL++LART PYYKRNRPH+CSFWVKGEC+RGEECPYRH+
Sbjct: 198 DSDGTSPGGALQGKANAPSDLLMKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHDM 257
Query: 683 PTDPDDPLADQNIKDRYYGVNDPVA 757
PTDP+DPLADQNIKDRYYGVNDPVA
Sbjct: 258 PTDPNDPLADQNIKDRYYGVNDPVA 282
Score = 41.5 bits (93), Expect = 8e-04
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +1
Query: 133 MATSKSTNTYNRQNWEDA 186
MATSKS NTYNRQNWEDA
Sbjct: 90 MATSKSANTYNRQNWEDA 107
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 34.7 bits (76), Expect = 0.093
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +2
Query: 590 PYYKRNRPHV----CSFWVKGECRRGEECPYRH-EKPTDPDDPLADQNIKDRYYGVNDPV 754
P+Y + H C F+ KG C +G+ C Y H ++ + P P + + Y V +P+
Sbjct: 1337 PFYDQRYIHQPTIPCRFFAKGNCLKGDRCLYLHAQEASHPMPPTFTETVTCSSYEVTNPL 1396
>SB_11425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 33.5 bits (73), Expect = 0.21
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 605 NRPHVCSFWVKGECRRGEECPYRHEKPTDPD 697
N+ + C ++ KG C G EC + H PT+ D
Sbjct: 183 NKHYYCIYFAKGCCHLGAECGFIHSIPTEKD 213
>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 32.7 bits (71), Expect = 0.38
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 614 HVCSFWVKGECRRGEECPYRHE 679
HVC +++KG+C G++C H+
Sbjct: 98 HVCPYYIKGKCAHGQKCRLSHK 119
>SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)
Length = 508
Score = 32.7 bits (71), Expect = 0.38
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 590 PYYKRNRPHVCSFWVK-GECRRGEECPYRHEKPTDPDDPLADQN 718
P R VC F+ K G CR GE+C + H++ +D ++++
Sbjct: 33 PIENARRQKVCRFYAKKGNCRFGEKCRFVHKEIISKEDDKSERS 76
>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 569 VRLARTAPYYKRNRPHVCSFWVKGECRRGEECPYRH 676
V+L+ AP K + VC + KG+CR GE+C + H
Sbjct: 95 VQLSEQAPTLK-GKKRVCWKFQKGKCRFGEKCKFVH 129
>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 30.3 bits (65), Expect = 2.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 617 VCSFWVKGECRRGEECPYRH 676
+CS+++ G C +GE CP H
Sbjct: 365 MCSYYLNGNCSQGENCPRWH 384
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 605 NRPHVCSFWVKGECRRGEECPYRHEKPTDPDDPLADQN 718
N PH+C +V G+C E+C H P D AD N
Sbjct: 435 NMPHICEQYVAGKC--DEKCSGIHACPGFVIDECADGN 470
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 599 KRNRPHVCSFWVKGECRRGEECPYRHE 679
K NR HVC +++ +CRR + C + HE
Sbjct: 944 KCNRIHVCKKFIQRKCRR-KNCFFMHE 969
>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
Length = 1199
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 302 VSWSKNAFQENGNMPDLFETEKCLSNMFIGF---GIWSANPSERCCIKSS 442
++W AFQ + + +TE N+ +G+ G+W + P+E + SS
Sbjct: 770 ITWEIGAFQREESQNVIRDTEWNTRNVVLGYDVAGVWRSTPTEENLVTSS 819
>SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038)
Length = 657
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 590 PYYKRNRPHVCSFWVKGECRRGEECPYRH 676
P K C F++ G+CR GE+C +H
Sbjct: 27 PDNKMEEQAACKFFLLGQCRYGEQCFNKH 55
>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1331
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 617 VC-SFWVKGECRRGEECPYRH 676
+C F + GEC RGE C RH
Sbjct: 923 ICREFMMSGECHRGENCKLRH 943
>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
Length = 650
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 605 NRPHVCSFWVKGE-CRRGEECPYRHE 679
N +CSF +GE C RG+ C Y H+
Sbjct: 62 NSSKLCSFAARGEECTRGDSCFYGHD 87
>SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004)
Length = 445
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 599 KRNRPHVCSFWVKGE-CRRGEECPYRH 676
+RN P VC +V C RGE+C + H
Sbjct: 411 RRNPPPVCRHFVSNRGCLRGEQCHFLH 437
>SB_53801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +2
Query: 53 M*KWEISVLFDRVSCVESKIISRKDTPWLHRSQQTHTIVRIGKTPI 190
M KWEI L +SCVE + S LHR + +T++ I KT +
Sbjct: 89 MPKWEIDFLTFPLSCVEQEFAS------LHRVLRRNTVLDILKTDV 128
>SB_58169| Best HMM Match : zf-CCCH (HMM E-Value=0.0035)
Length = 289
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 614 HVCSFWVKGECRRGEECPYRH---EKPTDPDDPLADQNIK 724
++C F++KG CR G C H E + DD +IK
Sbjct: 161 NICRFYLKGNCRYGYLCKKSHAVEEVEEEKDDRHLQTDIK 200
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 470 QGILHTKLGESAVNSDPTQPTNSLKSKGSSDLLVRLARTAPYYKRNRP 613
+ + H K E+ + + T TNS + VR++ +KRNRP
Sbjct: 237 KSLFHDKWSENGEDRNSTGKTNSSNENITVSNSVRMSEGKSVFKRNRP 284
>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1207
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 315 RMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAAL 434
+++ KKTEI S ++ L D +Y LP +V DAA+
Sbjct: 370 KIQDKKTEIESHMSGANSIFLRTLFDKKYALPYRVIDAAV 409
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,118,929
Number of Sequences: 59808
Number of extensions: 566388
Number of successful extensions: 1376
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -