Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021020
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   2.6  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   3.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.0  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 109 NNIKKGHAMATSKSTNTYNRQNWEDADFPILCQTCLGDNPY 231
           NNI+  + ++   + +T NRQ      FPI C T LG   +
Sbjct: 39  NNIETKNQLSPF-NIDTPNRQKILKDGFPIKCGTFLGSGGF 78


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +3

Query: 258 KECKICS----RPFTVFRWCPGARMRFKKTEICQTCSKLKNVCQTCLLDLEYGL 407
           + C  C     R  +V  +CP A+   KK     T + L+ +C+ C    EY +
Sbjct: 73  RSCMCCQESGEREASVSLFCPRAKPGEKKFRKVITKAPLECMCRPCTSVEEYAI 126


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 313 APGHHRNTVKGLEHILHSLPIFL*SF*CKGYLQDM 209
           A GH  N V G+  +L +  + L  F    + QD+
Sbjct: 67  ADGHPVNDVPGVRRVLRNGTLVLLPFPAAAFRQDV 101


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 313 APGHHRNTVKGLEHILHSLPIFL*SF*CKGYLQDM 209
           A GH  N V G+  +L +  + L  F    + QD+
Sbjct: 67  ADGHPVNDVPGVRRVLRNGTLVLLPFPAAAFRQDV 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,321
Number of Sequences: 438
Number of extensions: 4873
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)