Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021018
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0855 - 32271631-32271712,32271823-32271922,32272012-322720... 40 0.002
01_03_0268 + 14436631-14436756,14436866-14436929,14437001-144371... 39 0.005
06_01_0762 + 5699619-5699744,5699831-5699891,5699979-5700078,570... 30 1.9
01_05_0465 + 22485728-22485835,22486125-22486955 30 2.5
07_03_1137 - 24220597-24220619,24220694-24221414,24221513-242217... 29 5.8
05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802 29 5.8
12_01_0908 - 8823782-8826124 28 7.7
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 28 7.7
03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684 28 7.7
01_01_0003 + 11774-12813,12906-13271,13359-13437,13840-13968,139... 28 7.7
>02_05_0855 -
32271631-32271712,32271823-32271922,32272012-32272072,
32272169-32272294
Length = 122
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +1
Query: 520 SGKLNPQKAFFQGKIKIQGNMGLAMKLT 603
SGKLNPQ AF GK+KI+G++ A K T
Sbjct: 85 SGKLNPQMAFIMGKLKIKGSISAAQKFT 112
>01_03_0268 +
14436631-14436756,14436866-14436929,14437001-14437100,
14437187-14437478
Length = 193
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1
Query: 520 SGKLNPQKAFFQGKIKIQGNMGLAMKLT 603
SGKLNPQ F GK+KI+G++ A K T
Sbjct: 86 SGKLNPQMVFIMGKLKIKGSISAAQKFT 113
>06_01_0762 +
5699619-5699744,5699831-5699891,5699979-5700078,
5700436-5700560,5700631-5700706,5701122-5701164
Length = 176
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 326 MQTDQD-NLIEKVRGIYGFKVRNGPDGA-EGYWVINAKEGK-GKVSYNGSEKPDVTFTIS 496
M TD ++ +KV +Y F + G E +V++ K+G+ K Y G KPD TF+ +
Sbjct: 19 MATDAGKDIAKKVGLVYQFNIAPKKIGVDEEIFVVDLKKGEVTKGPYEG--KPDATFSFT 76
Query: 497 DED 505
D D
Sbjct: 77 DSD 79
>01_05_0465 + 22485728-22485835,22486125-22486955
Length = 312
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 187 NLGLGGAV-VITMYRKGFSNVTPKMWPPSPTTRRLQGLQIHED 312
NLGL GA V+ + F M+PP P + GL+ H D
Sbjct: 146 NLGLAGAAGVVDAFAPPFVGTKFAMYPPCPRPDLVWGLRAHTD 188
>07_03_1137 -
24220597-24220619,24220694-24221414,24221513-24221731,
24221805-24222505,24223127-24223376
Length = 637
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3
Query: 528 TEPTKGVLPRQDQDSGQHGAGYEAD*FAASSRRQDRDDPI*TVDGAGPRIL 680
+EP G + RQ G+ GAG EA+ AA+ + + ++ DGA P+IL
Sbjct: 7 SEPIGGRVRRQSSSPGEGGAG-EAEAAAAAEEKGEEEE---GKDGALPQIL 53
>05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802
Length = 320
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 154 EVPRARIA-LQHNLGLGGAVVITMYRKGFSNVTPKMWPPSPTTRRLQGLQIHEDP 315
EV +A +A L +LG+GG + S + +PP P R G H DP
Sbjct: 207 EVTKAIMAVLGESLGVGGGYYREFFEDSSSIMRCNYYPPCPEPERTLGTGPHCDP 261
>12_01_0908 - 8823782-8826124
Length = 780
Score = 28.3 bits (60), Expect = 7.7
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Frame = -2
Query: 541 FVGSVSRI*DRHVFVADRERHVGLLRAVVADFPFAFFRIDDPVTLGAVWTVSD-----LE 377
F+G++S + VF +E H L+R +++ PF + D T G + + +
Sbjct: 525 FMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKIT 584
Query: 376 TVDPADFLDQVVLVGLHGLFK-DLHVFEDLEASGLSATAATFSA 248
D A + ++ G+HG +FE ++ GL ++ A
Sbjct: 585 KKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIA 628
>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
8332461-8332619,8333246-8333372,8333444-8333775,
8333859-8334593,8334735-8335073,8335160-8335313,
8335405-8336154,8336242-8336372
Length = 1565
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 299 KYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAE 409
+Y K L E++ + + KV G+Y RN DG E
Sbjct: 1367 EYFKYLTESVSSGSPTCLAKVLGLYQVAARNLRDGKE 1403
>03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684
Length = 222
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 365 GIYGFKVRNGPDGAEGYWVINAKEGKGKVSYNGSEKPDVTF 487
G+ G K+ A W +A++G G+ Y GS PD F
Sbjct: 103 GLAGLKMARAASTASR-WRASAEQGSGEDDYGGSVVPDAGF 142
>01_01_0003 +
11774-12813,12906-13271,13359-13437,13840-13968,
13969-14171,14266-14359
Length = 636
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 525 PGYKIGTSSSLIVNVTSGFSEPL*LTF 445
P + T+ +L+VNV +G EPL LT+
Sbjct: 63 PALNVTTNWNLVVNVRNGLDEPLLLTW 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,788,735
Number of Sequences: 37544
Number of extensions: 439654
Number of successful extensions: 1085
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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