Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021018
         (815 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42890.1 68418.m05227 sterol carrier protein 2 (SCP-2) family...    36   0.024
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family...    29   3.7  
At3g47290.1 68416.m05139 phosphoinositide-specific phospholipase...    28   8.5  

>At5g42890.1 68418.m05227 sterol carrier protein 2 (SCP-2) family
           protein similar to sterol carrier protein-2 [Homo
           sapiens] GI:432973; contains Pfam profile PF02036: SCP-2
           sterol transfer family
          Length = 123

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1

Query: 520 SGKLNPQKAFFQGKIKIQGNMGLAMKLT 603
           +GK+NPQ AF +G +KI+G++  A K T
Sbjct: 86  TGKMNPQMAFIRGAMKIKGSLSAAQKFT 113



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +2

Query: 305 MKILEEAMQTDQDNLI-EKVRGIYGFKVRNGPDGAEGY-WVINAKEGK-GKVSYNGSEKP 475
           M +++E + TD    + EK+  +Y   +     G E   ++++ K+G+  K  Y G  K 
Sbjct: 12  MDMMKEHLSTDAGKEVTEKIGLVYQINIAPKKLGFEEVTYIVDLKKGEVTKGKYEGG-KV 70

Query: 476 DVTFTISDED 505
           D TF+  D+D
Sbjct: 71  DATFSFKDDD 80


>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
           protein similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1309

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +3

Query: 240 QRDAENVAAVADNPEASRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTG 419
           Q+D E+     D  E++R+ +  ++ K+P        S++SA ST  +S    +  +   
Sbjct: 740 QQDPESTIQTQDQQESTRTEDVKKNRKKPTTSKPKKKSKESAKSTQKKSVDWDSLRKEAE 799

Query: 420 SSMRKKAK 443
           S  RK+ +
Sbjct: 800 SGGRKRER 807


>At3g47290.1 68416.m05139 phosphoinositide-specific phospholipase C
           family protein similar to phosphoinositide-specific
           phospholipase C [Nicotiana rustica] GI:1771381,
           1-phosphatidylinositol-4,5-bisphosphate
           phosphodiesterase [Nicotiana rustica] GI:2765140;
           contains Pfam profiles PF00168: C2 domain, PF00388:
           Phosphatidylinositol-specific phospholipase C, X domain
          Length = 531

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = -2

Query: 211 RQRPRDPSYVAELSGHVA-PHGRRQASRNSESELIR--WWYSXXXXXXXXXXXXISRDNN 41
           RQ P DP+Y + +S HV  P G  Q     ++  I+   WY              +R   
Sbjct: 271 RQHPADPNYQSLVSFHVVEPRGMLQNVLTGKANKIQRPGWYETDIISFTQKRFLRTRPQR 330

Query: 40  KYLRMSTERPSKS 2
           K L  +  +P ++
Sbjct: 331 KLLIYAPYKPQRA 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,330,331
Number of Sequences: 28952
Number of extensions: 332988
Number of successful extensions: 782
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)