Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021016
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    29   1.00 
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   2.3  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   3.0  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    26   5.3  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   7.0  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   9.3  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 350 HPSTSTPIEPVNQGSRIRNVPIKYIPVLENGSGTPAR 460
           HPS S+  +PV+  S   N+P   + ++ N S TPA+
Sbjct: 268 HPSLSS--QPVSVPSNTINIPTDSLSIVSNPSQTPAK 302


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +2

Query: 260 IMTSKDSVSWEKNGKNRKTVRYVPIQLEAGHPSTSTPIEPVNQGSRIRNVPIKYIPVL 433
           I  SK  VSW  NG   +T  Y P    A H      +   NQ S + ++ I    VL
Sbjct: 58  ITISKQCVSWIGNGHAAETTLYFP----ASHQQIQLTLHLENQNSIVDSIHINADTVL 111


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -3

Query: 306 FFPFFSQETESFEVIISGSLFFLTV*RALMLVILHLKS 193
           +F F S E+ SF++ I+ +L  LTV   + +V+ H+ S
Sbjct: 786 YFQFVSMESNSFDIPITVNLSHLTV-EHMSIVLRHVYS 822


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 362 MYSGDQPPIVLAHNERFFY 306
           MY    PP+++ H +RFFY
Sbjct: 380 MYIESLPPVLILHLKRFFY 398


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 496 NDWAHWCVYPWFP 458
           ND  H C++PW P
Sbjct: 501 NDSLHHCIFPWLP 513


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/45 (26%), Positives = 28/45 (62%)
 Frame = +3

Query: 174 DRADDEYSSDEELPALKRVKQLKRTNFQIL*LQKIQFLGRKMEKI 308
           ++ D+EY+ +EE  A + ++    ++ +   L+K++  G ++EKI
Sbjct: 40  EKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEVEKI 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,820
Number of Sequences: 5004
Number of extensions: 61442
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)