Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021016
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0732 + 5397217-5397327,5399010-5399831                           31   0.79 
09_04_0306 + 16555664-16556623                                         31   1.0  
02_05_0925 - 32768815-32769654                                         30   2.4  
07_03_1374 + 26117560-26117672,26117761-26117831,26118389-261184...    29   4.2  
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342...    28   9.7  

>06_01_0732 + 5397217-5397327,5399010-5399831
          Length = 310

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 630 CHICQENFKTTISKTMHPS*SRRSRQHCNRS 722
           CH C+ NF T+ +   H +  +R RQH  R+
Sbjct: 115 CHYCRRNFPTSQALGGHQNAHKRERQHARRA 145


>09_04_0306 + 16555664-16556623
          Length = 319

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 630 CHICQENFKTTISKTMHPS*SRRSRQHCNRSCF 728
           CH C  NF T+ +   H +  +R RQH  R+ F
Sbjct: 97  CHYCCRNFPTSQALGGHQNAHKRERQHAKRAQF 129


>02_05_0925 - 32768815-32769654
          Length = 279

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 630 CHICQENFKTTISKTMHPS*SRRSRQHCNRS 722
           CH C  NF T+ +   H +  +R RQH  R+
Sbjct: 92  CHYCCRNFPTSQALGGHQNAHKRERQHAKRA 122


>07_03_1374 +
           26117560-26117672,26117761-26117831,26118389-26118410,
           26118510-26118573
          Length = 89

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 630 CHICQENFKTTISKTMHP 683
           C ICQENF TT++    P
Sbjct: 49  CRICQENFSTTVNALTEP 66


>09_04_0489 -
           18031187-18031579,18032033-18034030,18034102-18034234,
           18035360-18036108
          Length = 1090

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 78  HKLIKMKSVLTYIRGLLGWVDENPT 152
           H+    K V TY+  LLG+V+  PT
Sbjct: 254 HQFATCKEVSTYLMSLLGYVEAKPT 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,945,061
Number of Sequences: 37544
Number of extensions: 373150
Number of successful extensions: 935
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)