Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021016
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.6  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   5.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.8  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 315 VFLFFPFFSQETESFEVIISG-SLFFLTV*RALMLV-ILHLKSIHR 184
           +FL F  F   +ESF+++ +G +L  L + + L LV +L L  + R
Sbjct: 182 IFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVR 227


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 315 VFLFFPFFSQETESFEVIISG-SLFFLTV*RALMLV-ILHLKSIHR 184
           +FL F  F   +ESF+++ +G +L  L + + L LV +L L  + R
Sbjct: 182 IFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVR 227


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 315 VFLFFPFFSQETESFEVIISG-SLFFLTV*RALMLV-ILHLKSIHR 184
           +FL F  F   +ESF+++ +G +L  L + + L LV +L L  + R
Sbjct: 182 IFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVR 227


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 466 WFPCWSP*SILQYWY 422
           +F CW+P  ++  WY
Sbjct: 269 FFICWTPYYVMSLWY 283


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 466 WFPCWSP*SILQYWYVFN 413
           WF  W+P  ++ +  +FN
Sbjct: 287 WFMAWTPYLVINFSGIFN 304


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 466 WFPCWSP*SILQYWYVFN 413
           WF  W+P  ++ +  +FN
Sbjct: 37  WFMAWTPYLVINFSGIFN 54


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 95  EVRVDLYTRSSWL 133
           + RVD++ R SW+
Sbjct: 31  DFRVDMFVRQSWI 43


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = -2

Query: 361 CTRVTSLQLYWHITNGFSIFSIFLPRN*IF 272
           C+R+T +++   +   +S+F     RN ++
Sbjct: 437 CSRITPMEVVSMLNAMYSLFDTLTERNRVY 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,691
Number of Sequences: 438
Number of extensions: 4188
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)