Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021015
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        28   0.073
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.17 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   6.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   6.3  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   8.3  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 0.073
 Identities = 21/67 (31%), Positives = 36/67 (53%)
 Frame = +2

Query: 578 QNNLSQALVQNLSEQDLRNLDLSRINEVQLQNLRTDIPLHHESNVSQGGRQLDQELMQAE 757
           +N+L Q L +N    D  ++++S + EV    + TD P  HES +  GG ++ Q ++Q +
Sbjct: 3   ENHLEQTL-ENAGMPD-ESINISDVIEV----IETD-PDFHESTMFNGGGEIPQNIIQQQ 55

Query: 758 SSAFRFR 778
               R R
Sbjct: 56  PQQARRR 62



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 581 NNLSQALVQNLSEQD 625
           NNLS+   QNLS  D
Sbjct: 506 NNLSETFTQNLSLMD 520


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 344 MQLLHGNLGVVFTFQLMFLKTVHVHFVILFSALCSSLFTKS--IFKNH 207
           M LL     ++FT  L+FL  ++  +  L   LC   F ++  IF  H
Sbjct: 264 MHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLCIYYFCRAFIIFPTH 311



 Score = 26.6 bits (56), Expect = 0.22
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 317 VVFTFQLMFLKTVHVHFVILFSALCSSLFTKS--IFKNHSAFKELNCLQFF 171
           ++FT  L+FL  ++   V LF  LC   F  +  IF  H  F  L C+  F
Sbjct: 121 IIFTVHLLFLLCIYYFVVPLFFLLCIYYFYCAFIIFTVHLLF--LLCIYHF 169


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 345 DATAPWKFGCGIHFPADVSEDCPCT 271
           D   P +F  G + PAD  ++C CT
Sbjct: 545 DDIDPQQFCNGDNRPADCQQNCMCT 569


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 605 QNLSEQDLRNLDLSRINEVQLQNLRTDIPLHHESNVSQG 721
           QN+   ++ N + + +NE Q     T +P    + +S+G
Sbjct: 309 QNMYPGEMYNPEHTTVNEAQPYVRNTTVPTQGVARMSRG 347


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 605 QNLSEQDLRNLDLSRINEVQLQNLRTDIPLHHESNVSQG 721
           QN+   ++ N + + +NE Q     T +P    + +S+G
Sbjct: 257 QNMYPGEMYNPEHTTVNEAQPYVRNTTVPTQGVARMSRG 295


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 478 YTLKGTK*IYTKLTSRGGL 534
           +T K  K +YT LTS G L
Sbjct: 55  FTFKSWKVLYTSLTSFGYL 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,693
Number of Sequences: 336
Number of extensions: 3670
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)