Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021015
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    28   1.7  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    26   5.2  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    26   5.2  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   6.9  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.9  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   9.2  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    25   9.2  

>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 599 LVQNLSEQDLRNLDLSRINEVQLQNLRTDIPL----HHESNVSQGG 724
           L ++++ ++LRNL   R N   L +++ D+PL     H+ +VS GG
Sbjct: 794 LKKSITSRELRNLYQDRYNGEPLIHVQGDVPLVKDNAHKHHVSVGG 839


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -3

Query: 86  FRVESIKYYIVSINMFEKIKIKQVFFN 6
           F +ES++++ + IN  EKI +K +F+N
Sbjct: 43  FFIESLQFHYL-INQSEKISLKLIFWN 68


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 255 EENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNS 374
           +E  K Y+    K ++E   H Q+ +EQ  +  + +L  S
Sbjct: 31  KEKRKEYLTGFHKRKVERRKHAQVQLEQQKREERLALRKS 70


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 303 PADVSEDCPCTFCNSLLGIMFFSFH 229
           P  V + CP T  N+LL  +  SFH
Sbjct: 377 PMYVPQKCPATVYNNLLNFLEGSFH 401


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 184 QLSSLNAEWFLKMDFVKREEHNA 252
           QL S N  W L  D V+ EE+N+
Sbjct: 315 QLLSKNRNWVLMRDIVQLEEYNS 337


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
 Frame = +2

Query: 560 RNEL-ELQNNLSQALVQNLSEQ---DLRNLDLSRINEVQLQNLRTDIPLHHESNV 712
           RNEL +  NN+ + L ++L      + +NL+L+ +N   ++ ++  +P  ++SN+
Sbjct: 553 RNELLDDYNNVQKILNESLEASVHLNTKNLELADLNNNLVKQIQHRVPPENQSNL 607


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +2

Query: 476 NTPSKGRNRFTQNLRHEEALRNLDVTLFRNELELQNNLSQALVQNLSEQDLRNLDLSRI- 652
           N  +K R R  +    E+ LR LD  + R     QNN       +  +  L  +DLS+  
Sbjct: 152 NEANKKRER-QEKSDEEQRLRLLDEQIKRAYESAQNNEDNKDGSSREQPVLHEIDLSKKG 210

Query: 653 NEVQLQNLRTDIPLHHESN 709
           N +QL NL +    H   N
Sbjct: 211 NPIQL-NLSSSSDSHSAQN 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,960
Number of Sequences: 5004
Number of extensions: 63653
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)