Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021015
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1792 + 29569623-29569737,29569848-29569981,29570117-295702...    33   0.25 
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493...    31   0.77 
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658...    28   7.2  
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295...    28   7.2  
12_01_0340 - 2605770-2605916,2606353-2606595,2607260-2607531,260...    28   9.5  

>07_03_1792 +
           29569623-29569737,29569848-29569981,29570117-29570284,
           29572817-29573003,29573098-29573422,29573591-29574368,
           29574897-29575022
          Length = 610

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 536 RNLDVTLFRNELELQNNLSQALVQNLSEQDLRNLDL 643
           R++  T  RNE  LQNN  +A ++NL E  +R  DL
Sbjct: 228 RSIKPTDRRNEYPLQNNSKEAAMENLEESSVRAADL 263


>06_01_0675 +
           4937309-4937354,4937606-4937718,4937810-4937905,
           4938003-4938059,4938145-4938300,4938402-4938486,
           4938727-4938817,4938896-4939060,4939150-4939345,
           4939593-4939731,4940187-4941874,4942575-4942765,
           4942850-4942994
          Length = 1055

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = +2

Query: 569 LELQNNLSQALVQNLSEQDLRNLDLSRINEVQLQNLRTDIPLHHESNVSQGGRQLDQELM 748
           L+ Q    Q  +Q LS+ +++   L  + ++Q QN+ + +   H+S + Q   Q  QE++
Sbjct: 633 LQSQQQQQQLQLQQLSQPEVQ---LQLLQKIQQQNMLSQLNPQHQSQLIQQLSQKSQEIL 689

Query: 749 QAESSAFRF 775
           Q +    +F
Sbjct: 690 QQQILQHQF 698


>08_02_1284 -
           25864049-25864202,25864690-25864880,25865053-25865895,
           25865953-25866896,25867052-25867190,25867259-25867334,
           25867666-25867788,25867869-25867952,25868145-25868235,
           25868448-25868532,25868620-25868784,25868872-25868928,
           25870141-25870302
          Length = 1037

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 255 EENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLPL 404
           ++     +  +Q+ Q   + H QI ++ +H +M +S+N     H  +L L
Sbjct: 556 QQQQTQQLQPVQQVQQSVQEHQQIKIQPVHVSMDASMNTQVADHQMKLQL 605


>08_02_0956 +
           23026108-23027146,23027255-23027395,23029334-23029566,
           23029652-23030989
          Length = 916

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 422 GHLPWGEWQLEVVDYTGVVQRGLHSLM-QLLHG 327
           G +P G+W    VD TG+V+R +   M +L++G
Sbjct: 148 GAVPRGDWSTWTVDVTGLVKRPMRLTMDELVNG 180


>12_01_0340 -
           2605770-2605916,2606353-2606595,2607260-2607531,
           2607691-2607733,2607822-2607899,2608026-2608085,
           2608272-2608331,2609440-2609577,2609655-2609767,
           2610333-2610569,2610867-2610918
          Length = 480

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 282 SLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHN 389
           SLQ+   ++E      +EQLHQ++  ++ N G V N
Sbjct: 370 SLQQSSQQAEEALSQGLEQLHQSLAETVANGGSVVN 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,740,144
Number of Sequences: 37544
Number of extensions: 367472
Number of successful extensions: 933
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)