Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021015
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)                 31   1.0  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     29   4.2  
SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052)              29   4.2  
SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)                 29   5.5  
SB_22018| Best HMM Match : VKOR (HMM E-Value=5.9)                      28   7.3  
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                28   7.3  
SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_55724| Best HMM Match : SURF6 (HMM E-Value=0.62)                    28   9.7  
SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1)             28   9.7  
SB_16900| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_15163| Best HMM Match : VAR1 (HMM E-Value=3.1)                      28   9.7  
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.7  

>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 21/68 (30%), Positives = 37/68 (54%)
 Frame = +2

Query: 497  NRFTQNLRHEEALRNLDVTLFRNELELQNNLSQALVQNLSEQDLRNLDLSRINEVQLQNL 676
            ++ T+ L  E+ L+ LDVT  + E E + ++   +    S ++L  ++    N+VQLQNL
Sbjct: 1809 DKATKELGMEKVLKELDVTWSQMEFEHEEHVRTHIPLLKSSEEL--IETLEDNQVQLQNL 1866

Query: 677  RTDIPLHH 700
             T   + H
Sbjct: 1867 MTSKYIGH 1874


>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
          Length = 1065

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 536 RNL-DVTLFRNELELQNNLSQALVQNLSEQDLRNLDLSRINEVQLQNLR 679
           +NL D+T+ R+ L+L  N S    Q L   DL N D+S I +   +NLR
Sbjct: 69  KNLGDLTVSRSPLKLLKNTSFQDYQYLKWLDLSNNDISDIQDGTFENLR 117


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +2

Query: 485  SKGRNRFTQ-NLRHEEALRNLDVTLFRNEL-ELQNNLSQALVQNLSEQDLRNLDLS-RIN 655
            S+ R  F + N  HE   + L  +L   EL ELQNNL Q L     + D  + DL  +I 
Sbjct: 1384 SRLREDFNKVNAEHEREKKELK-SLHNKELQELQNNLKQQLAVVQQKSDKLSEDLKVKIE 1442

Query: 656  EVQL 667
            EV++
Sbjct: 1443 EVEI 1446


>SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052)
          Length = 532

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +3

Query: 252 REENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLPLS-PRQMSTL 428
           + + Y + +   +KHQ    YH  ++  + H     +L       N+Q+ L+ P +  T 
Sbjct: 342 KHQTYHVTLTPPRKHQT---YHVMLTPPRKHLTYHVTLTPPSKNQNYQVTLTPPHKHQTY 398

Query: 429 MLKTNHLSRSLNFNETIHPQRDEIDLHKT 515
            +     S+ L ++ T+ P     + H T
Sbjct: 399 HVMLTQPSKHLTYHVTLTPPSKNQNYHVT 427


>SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)
          Length = 423

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +2

Query: 482 PSKGRNRFTQNLRHEEALRNLDVTLFRNELELQNNLSQALVQNLSEQDLRNLDLSRINEV 661
           PSK + +FT ++  + A   LD T+F    E+   L    +Q L+E++L N  +  IN  
Sbjct: 69  PSKYKGKFTYDVLADVATSLLDGTVF----EIVKGLED--IQQLTERNLLNKRMKVINSH 122

Query: 662 QLQNL 676
           ++Q +
Sbjct: 123 KVQRM 127


>SB_22018| Best HMM Match : VKOR (HMM E-Value=5.9)
          Length = 433

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +2

Query: 251 PRRELQNVHGQSSETSAGK*IPHPNFHGAVASSYAVLSEQLRYSPQLPIATL--PKADVH 424
           PRR+ ++    S  TS    +PHP   G +     +      +   +P+  +  P  D+H
Sbjct: 184 PRRDRESNPTHSRLTSCANLVPHPPSLGLLMIPTTLTKRDASHGALVPVDWMFTPIVDLH 243

Query: 425 SHAKNKPFK 451
           +H  N   K
Sbjct: 244 NHIINSEQK 252


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +2

Query: 509 QNLRHEEALRNLDVTLFRNELELQNNLSQALVQNLSEQDLRNLDLSRINE--VQLQNLRT 682
           +NL H+E LR    T    E + +  + +   ++ S  + R+   + ++E    L+ +R 
Sbjct: 579 ENLTHKEHLRKEIKTELSRETDFEKIVQEIAAESSSAVNRRSFTETNLDERFDNLEEIRA 638

Query: 683 DIPLHHESNVSQGGRQLDQELMQAESSAFRF 775
                 ES++S  G +  Q +  +++S +R+
Sbjct: 639 RSLKDLESSLSLEGIESKQTMSHSKASKYRW 669


>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 482 PSKGRNRFTQNLRHEEALRNL-DVT-LFRNELELQNNLSQALVQNLSEQDLRNLDLS 646
           P+K R  F   L  +E++++L D   ++ N+ ++  N   A    L EQDL+  D+S
Sbjct: 422 PTKQRCEFVDRLSKKESVQDLLDARPVYTNDGKVYKNHHCAYCSGLHEQDLKVYDIS 478


>SB_55724| Best HMM Match : SURF6 (HMM E-Value=0.62)
          Length = 1105

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 314 VFTFQLMFLKTVHVHFVILFSALCSSLFTKS 222
           +  +QL+FL  V  H VI  SALC   F  S
Sbjct: 15  IVNYQLIFLPDVVKHTVIASSALCPKPFATS 45


>SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1)
          Length = 641

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -3

Query: 380 YTGVVQRGLHSLMQLLHGNLGVVFTFQLMFLKTVHVHFVILFSALCSSLFTKSIFKNHSA 201
           Y G V  GL++L+       G VFT     L +  +HF  +F+ L ++L   S+    + 
Sbjct: 237 YFGAVFTGLNTLLDPSMLYFGAVFTGLNTLLGSSMLHFGAVFTGL-NTLLDSSMLYFGAV 295

Query: 200 FKELNCL 180
           F  LN L
Sbjct: 296 FTGLNTL 302


>SB_16900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +3

Query: 261 NYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLPLSPRQMS 422
           +Y   ++SL+KH   S YH QIS       + S +N S +V   +   SP Q+S
Sbjct: 90  SYIKPVNSLEKH---SWYHGQISRNAAEYLLSSGINGSFLVRESE--SSPGQLS 138


>SB_15163| Best HMM Match : VAR1 (HMM E-Value=3.1)
          Length = 354

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +2

Query: 563 NELELQNNLSQALVQNLSEQDLRNLDLSRINEVQLQNLRTDIPLHHESNVSQGGRQLDQE 742
           N+  LQ+N++Q L+Q+   QDL       IN+  LQ+      L H  N       ++Q+
Sbjct: 148 NQDLLQHNINQDLLQHTINQDLLQ---HTINQDLLQHTINQDLLQHTINQDLLQHTINQD 204

Query: 743 LMQ 751
           L+Q
Sbjct: 205 LLQ 207


>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +3

Query: 276 MDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLP----LSPRQMSTLMLKTN 443
           +DS+Q  QL  E H QI         + ++ +SG++   Q+P    LS +Q   + +   
Sbjct: 618 LDSVQLEQLSFENHHQIMPGTPVSPSELAMVSSGLLSTSQIPSSIHLSTQQQIAIAVAQQ 677

Query: 444 HLSRSLNFNETIHPQ 488
              + L     + PQ
Sbjct: 678 QQQQQLGLQSGLPPQ 692


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,122,296
Number of Sequences: 59808
Number of extensions: 448543
Number of successful extensions: 4541
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4539
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)