Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021015
(778 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53155-3|AAC48267.3| 492|Caenorhabditis elegans Hypothetical pr... 32 0.40
AC024882-5|AAF60932.1| 666|Caenorhabditis elegans Hypothetical ... 30 1.6
Z50177-1|CAA90543.2| 607|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF039715-2|AAB96731.1| 158|Caenorhabditis elegans Hypothetical ... 29 2.8
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st... 29 3.7
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st... 29 3.7
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr... 29 4.9
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 29 4.9
AF000266-7|AAC71173.1| 212|Caenorhabditis elegans Hypothetical ... 29 4.9
AC024817-5|ABQ13054.1| 274|Caenorhabditis elegans Hypothetical ... 29 4.9
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 28 6.5
U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical ... 28 6.5
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr... 28 8.6
>U53155-3|AAC48267.3| 492|Caenorhabditis elegans Hypothetical
protein ZC513.5 protein.
Length = 492
Score = 32.3 bits (70), Expect = 0.40
Identities = 24/88 (27%), Positives = 39/88 (44%)
Frame = -3
Query: 305 FQLMFLKTVHVHFVILFSALCSSLFTKSIFKNHSAFKELNCLQFFSVTTTSLT*KYVTLI 126
F+++ V +H +L + LC+ +F KN+ F LN LQF + K VT+
Sbjct: 336 FRMILFFGVILH--LLANVLCTGMFLLVASKNYPGFDALNYLQFQNRFDAK---KPVTVY 390
Query: 125 YD*TCASRA*QRYFRVESIKYYIVSINM 42
D CA R+ + Y + N+
Sbjct: 391 IDNACAQTGVNRFLHINDAWTYNKTENL 418
>AC024882-5|AAF60932.1| 666|Caenorhabditis elegans Hypothetical
protein Y9C9A.8 protein.
Length = 666
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 752 PALTPDPTVCHPD*HYFHDAMECLFSN-FVVAL-HLFDSSL 636
P + P PT+ + D + EC+F+N FV+A+ HLF S L
Sbjct: 217 PMVDPLPTIYYVDEYRNEFMSECIFNNEFVIAIRHLFRSPL 257
>Z50177-1|CAA90543.2| 607|Caenorhabditis elegans Hypothetical
protein F46G10.2 protein.
Length = 607
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 335 LHGNLGVVFTFQLMFLKTVHVHFVIL--FSALCSSLFTKSIFKNHSAFKELNCLQF 174
+H ++ Q+ F+ T V ++L F LC + + K+IFK AF L Q+
Sbjct: 328 VHHETLILSPLQIFFIFTGVVSLLLLLAFGWLCCNKYRKTIFKQKIAFSALKSSQY 383
>AF039715-2|AAB96731.1| 158|Caenorhabditis elegans Hypothetical
protein R06A10.3 protein.
Length = 158
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 276 MDSLQKH--QLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLPLSPR 413
M L +H QL++ YH E+ HQA++ + + H FQ SPR
Sbjct: 1 MKKLARHREQLKARYHIGSGQERGHQAVEKTAYRQRVQH-FQKSRSPR 47
>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
b protein.
Length = 1558
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +2
Query: 377 YSPQLPIATLPKADVHSHAKNKPFK*KFEL**DNTPSKGR--NRFTQNLRHEEALRNL 544
++ +L + L K ++ NK F+ +FEL +NT S+ N+ +N++ E+ +++
Sbjct: 1022 FTARLTVGQLEKTELSQIKYNKIFEKEFELEQENTESRREYFNKMVKNIQKEQGYKSV 1079
>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
a protein.
Length = 1613
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +2
Query: 377 YSPQLPIATLPKADVHSHAKNKPFK*KFEL**DNTPSKGR--NRFTQNLRHEEALRNL 544
++ +L + L K ++ NK F+ +FEL +NT S+ N+ +N++ E+ +++
Sbjct: 1022 FTARLTVGQLEKTELSQIKYNKIFEKEFELEQENTESRREYFNKMVKNIQKEQGYKSV 1079
>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical protein
F39B1.1 protein.
Length = 1607
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 539 NLDVTLFRNELELQNNLSQALVQNLSEQ-DLRNLDLSRINEVQLQNLRTDIPLHHE 703
+LD T F +LQ + V +L +NL I+E + NL+TDI L HE
Sbjct: 918 SLDFT-FEIYWQLQQRVDHCAVDDLPYAIRCQNLQQKMIDEHENPNLKTDIKLQHE 972
>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical protein
F39B1.1 protein.
Length = 1607
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 539 NLDVTLFRNELELQNNLSQALVQNLSEQ-DLRNLDLSRINEVQLQNLRTDIPLHHE 703
+LD T F +LQ + V +L +NL I+E + NL+TDI L HE
Sbjct: 918 SLDFT-FEIYWQLQQRVDHCAVDDLPYAIRCQNLQQKMIDEHENPNLKTDIKLQHE 972
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 348 AMQSSLNNSGIVHNFQLPLSPRQMSTLMLKTNHLSRSLNFN 470
A + +N S H +Q+ SP +LK HL+R FN
Sbjct: 771 AFEQDMNASSSGHAYQMQNSPEVSIGKLLKQQHLNRPNQFN 811
>AF000266-7|AAC71173.1| 212|Caenorhabditis elegans Hypothetical
protein W08F4.9 protein.
Length = 212
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +2
Query: 593 QALVQNLSEQDLRNLDLSRINEVQLQNLRTDIPLHH 700
+ LVQN E + NL L NEV L N RT LHH
Sbjct: 89 ELLVQNYEELKVTNLTL---NEVFLSNSRTLRSLHH 121
>AC024817-5|ABQ13054.1| 274|Caenorhabditis elegans Hypothetical
protein Y54G2A.12 protein.
Length = 274
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 276 MDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIV--HNFQLPLSPRQMSTLMLKTNHL 449
MD+LQ + +SM+Q+ + S+L IV + + + RQ++ + KT +
Sbjct: 1 MDALQAYSDSEHSDNDVSMDQIAKGKSSALLERAIVTAPDVESKSAIRQVAIVDPKTKEI 60
Query: 450 SRSLNFNETIHPQRDEIDLHKT 515
+ F++ P+ ++ K+
Sbjct: 61 KSNPKFDQLFKPESGPVNHFKS 82
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 267 KMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHNFQLPLSPRQ 416
+M+M L +H + ++H ++ M +H Q L +H L P+Q
Sbjct: 1172 QMHMQMLPQHHQQQQHHEEMMM--MHHQQQQQLQQQQQMHQMPLHHLPQQ 1219
>U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical
protein T24C12.3 protein.
Length = 651
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +2
Query: 587 LSQALVQNLSEQDLRNLDLSRINEV-QLQNLRTDIPLHHESNVSQGGR 727
+ +A+ QN++ Q + L+R+NE+ Q ++ T+I L E+N S GR
Sbjct: 261 VQEAIEQNIASQSVTPFILARVNELTQGASMATNIAL-LENNASIAGR 307
>AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical
protein ZC132.4 protein.
Length = 831
Score = 28.3 bits (60), Expect = 6.5
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Frame = +3
Query: 252 REENYKMYMDSLQKHQLESEYHTQISMEQLHQAM-QSSLNNSGIVHNF--QLPLSPRQMS 422
+++ +KM + + KHQL SE +++M QA+ Q + I+ Q P +
Sbjct: 456 KKQKFKMCIKTKNKHQLFSETRNKLNMNPAAQAVDQHDAMDIEILEELPQQAPTRQNEGD 515
Query: 423 TLMLKTNHLSRSLNFNETIHPQRDEIDLHKTYVTRRP*GI*MLHYLEMN 569
L+ SRS ++ + Q HK VT + + H+ ++N
Sbjct: 516 KQDLQEKDHSRSDQAHKDLQKQGQNKRNHKLAVTEAS-DMMIFHHHQLN 563
>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
protein.
Length = 1613
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +2
Query: 377 YSPQLPIATLPKADVHSHAKNKPFK*KFEL**DNTPSKGR--NRFTQNLRHEEALRNL 544
++ +L + L K ++ NK F+ +FEL +NT S+ R++ N++ E+ +++
Sbjct: 1022 FTARLTVGQLEKTELSQIKYNKIFEKEFELEQENTESRREYSTRWSTNIQKEQGYKSV 1079
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,927,745
Number of Sequences: 27780
Number of extensions: 350480
Number of successful extensions: 968
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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