Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021015
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.45 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.79 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   4.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 175 N*RQLSSLNAEWFLKMDFVKREEHNAEKRITKCTWTVFRNISWKVNTTPKF 327
           N +Q+S L +   +  + +K  + +  + I + TWTVFR+   +  T P F
Sbjct: 462 NRKQISELESNMQISPNELKPNDKS--QVIKQNTWTVFRDAITQTGTGPAF 510


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 476 NTPSKGRNRFTQNLRHEEALRNLDVTLFRNELELQNNLSQALVQNLSE 619
           N P  GR   TQ   +  AL + +  +  N+L L++   Q L  N+++
Sbjct: 360 NVPQSGRVNNTQRNEYLLALSDRNQNVLNNDLNLEHVNFQILGANVND 407


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 369 NSGIVHNFQLPLSPRQMSTLMLKTNHLSRSLNFNETI 479
           +SG+++N QL  SP+ ++   L T+ L + +     I
Sbjct: 143 DSGLINNIQLMCSPKLLA-FDLNTSKLLKQIEIPHNI 178


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 321 GCGIHFPADVSEDCPCTFCNS 259
           G G+  P D    C C  CNS
Sbjct: 422 GNGVIIPDDPPIGCECKTCNS 442


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 462 SNFYLNGLFLA*EWTSALGRVAIGSCGLYRSCSERTA*LDATAPW 328
           +N  LNG        ++ G V+ G CG      E+T   DA + W
Sbjct: 148 ANLNLNGTVNCTSSIASSGVVSAGECGPAADVDEKT---DANSWW 189


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 270 FCNSLLGIMFFSFHKIHF*KPF 205
           +CNSLL  + ++     F KPF
Sbjct: 417 YCNSLLNPIIYATLNRDFRKPF 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,861
Number of Sequences: 438
Number of extensions: 3935
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)