Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021013
         (712 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8FFL3 Cluster: Putative uncharacterized protein; n=3; ...    33   9.2  
UniRef50_Q98RZ6 Cluster: Putative uncharacterized protein orf291...    33   9.2  

>UniRef50_Q8FFL3 Cluster: Putative uncharacterized protein; n=3;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli O6
          Length = 277

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = +1

Query: 79  GDFCDWTHKFFGPGNFKIFHMFIGFARCV--CFVFXXXXXXXXXXXXXXAAVAVTP 240
           GDFCD    FF     K F   + F RCV  CF+               A +A+TP
Sbjct: 186 GDFCDTVGGFFITNVLKTFGAVVPFNRCVKHCFIRINHIVSFSQKRKICARLAITP 241


>UniRef50_Q98RZ6 Cluster: Putative uncharacterized protein orf291;
           n=1; Guillardia theta|Rep: Putative uncharacterized
           protein orf291 - Guillardia theta (Cryptomonas phi)
          Length = 291

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 511 ILRKRIIIQNRSTEISHKPFTLKHIMFK*KHHVK--YYNSF*RIKFQNRARNVQNDVND 341
           I+  RI I+     I HK F L       + H K  +YNS   ++ QN+  +VQND+N+
Sbjct: 3   IMPGRIYIEYIIINIKHKIFNLYKFN---RRHCKNTHYNSNRNVQLQNQHNDVQNDINN 58


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,890,294
Number of Sequences: 1657284
Number of extensions: 10172059
Number of successful extensions: 18622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18622
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)