Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021013
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   1.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 447 NVNGLCEISVDRFC 488
           ++  LC ISVDRFC
Sbjct: 128 SILNLCMISVDRFC 141


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 502 KRIIIQNRSTEISHKPFTLKHIMFK*KHHVK 410
           K  +I+ R   ++HKPFT  HI+     +VK
Sbjct: 482 KNTMIKARQYRLNHKPFTY-HIVVNSDKNVK 511


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 502 KRIIIQNRSTEISHKPFTLKHIMFK*KHHVK 410
           K  +I+ R   ++HKPFT  HI+     +VK
Sbjct: 482 KNTMIKARQYRLNHKPFTY-HIVVNSDKNVK 511


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 502 KRIIIQNRSTEISHKPFTLKHIMFK*KHHVK 410
           K  +I+ R   ++HKPFT  HI+     +VK
Sbjct: 108 KNTMIKARQYRLNHKPFTY-HIVVNSDKNVK 137


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 5   SEVSIHLSYISCPVRSLTYIH 67
           S ++I + YISCP  S+ + H
Sbjct: 180 SILAIKVYYISCPEISVNFAH 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,989
Number of Sequences: 438
Number of extensions: 3720
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)