Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021012X
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0147 - 1722947-1723168,1723268-1723464,1723654-1723690,172...    31   0.73 
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375...    30   0.96 
09_05_0008 + 20042390-20042845,20043323-20043457,20043539-200436...    30   1.3  
09_02_0175 + 5346738-5346941,5347225-5347491                           28   5.1  
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095...    28   5.1  
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879...    27   6.8  
04_03_0062 - 10581175-10581879                                         27   8.9  

>10_01_0147 -
           1722947-1723168,1723268-1723464,1723654-1723690,
           1724688-1725584
          Length = 450

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -1

Query: 411 FRDLVFCSSVSGMLDKSCGCLESLFKMYCCSPSSSISAHT 292
           F  +V C      L+  C  LE LF   C      IS+HT
Sbjct: 162 FSGIVLCKGFFAQLEAGCPALEDLFLHQCGVHDDEISSHT 201


>03_05_0175 +
           21513767-21513903,21534361-21535385,21537375-21537547,
           21537849-21538679
          Length = 721

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 168 TNKMRKQGQLKLQRHRTKVQKQNHPQSKPK 257
           TNK RK+ QL+ Q+HR +  +Q   Q KP+
Sbjct: 515 TNKKRKREQLEQQQHRGQEIQQQKQQIKPQ 544


>09_05_0008 +
           20042390-20042845,20043323-20043457,20043539-20043679,
           20043771-20043882,20044084-20044154,20044251-20044405,
           20044484-20044595,20044932-20045033,20045116-20045176,
           20045251-20045422,20045512-20045608,20045692-20045786,
           20045881-20046014,20046208-20046422
          Length = 685

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 389 EQKTKSRKRVKVDKERPMKLKRVTPSSDSCAETDEESGS 505
           E +  SRK+ K +K+R  K K  +PSS S +E +E S +
Sbjct: 21  EVEASSRKKEKKEKKR--KAKEPSPSSSSSSEEEERSST 57


>09_02_0175 + 5346738-5346941,5347225-5347491
          Length = 156

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 452 VLISLDVLYQPLLFSGIWFFVLPYLEC 372
           + +SL V +QP++ S +W    P+L+C
Sbjct: 129 IALSL-VQWQPVMLSSVWISASPFLDC 154


>05_06_0186 -
           26207298-26208548,26208743-26208853,26209286-26209507,
           26209623-26209658
          Length = 539

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = +2

Query: 299 ADMLDEGEQQYILNRLSKQPQLLSNIPDTEEQKTKSRKRVKVDKERPMKLKRVTPSSDSC 478
           A M+D G+Q ++L  L+K     S  P +   + K+   +       + + ++T S D C
Sbjct: 186 ACMVDSGKQLFLLTPLTKTKTCSSRCPKSSTTQLKTTTGLDQLNLPNIPVLKLTISDDDC 245

Query: 479 AETDEES 499
            + ++ +
Sbjct: 246 LDLEQSA 252


>03_05_0223 -
           22087076-22087340,22087448-22087726,22087808-22087950,
           22088029-22088133,22088272-22088465,22088561-22088753,
           22088893-22089202,22089335-22089558,22089862-22089990,
           22090019-22090078,22090426-22090617,22091463-22091522,
           22091606-22091688,22092473-22092611,22092949-22093083,
           22093187-22093462
          Length = 928

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 302 DMLDEGEQQYILNRLSKQPQLLSNIPDTEEQKTKSRKRVKVDKERPMKLKRVTPSSDSCA 481
           D  D+  ++ ++++ ++ P   +  P+   Q+ K R   K++KER  ++     SSD   
Sbjct: 319 DAYDKLVKEMVMDQRAR-PSDRTKTPEEIAQEEKERLE-KLEKERQKRMLGTAESSDEDD 376

Query: 482 ETDEESGSEWK 514
           + DEE     K
Sbjct: 377 DDDEEGDRSTK 387


>04_03_0062 - 10581175-10581879
          Length = 234

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 368 SNIPDTEEQKTKSRKRVKVDKERPMKLKRVTPSSDSCAETDEESGSE 508
           +N   T+++   SRKR++   +   + +R   SSDS A+ DEE   E
Sbjct: 34  ANPHKTDDETGPSRKRMRGQVKLAPRKRRAPASSDSDAD-DEEDAEE 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,911,065
Number of Sequences: 37544
Number of extensions: 192573
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)