Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021012X
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7) ident... 34 0.049
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 31 0.35
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 28 3.2
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 28 3.2
At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related... 28 4.3
At2g30670.1 68415.m03740 tropinone reductase, putative / tropine... 28 4.3
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 27 5.7
At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR... 27 5.7
At3g63120.1 68416.m07089 cyclin family protein similar to cyclin... 27 5.7
At5g49440.1 68418.m06117 expressed protein 27 7.5
At4g13970.1 68417.m02161 expressed protein 27 7.5
At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein, ... 27 7.5
At3g56150.1 68416.m06241 eukaryotic translation initiation facto... 27 7.5
At3g02860.2 68416.m00279 expressed protein 27 7.5
At3g02860.1 68416.m00278 expressed protein 27 7.5
At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family pr... 27 7.5
At4g32330.1 68417.m04599 expressed protein 27 9.9
>At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7)
identical to COP1-Interacting Protein 7 (CIP7)
GI:3327868 from [Arabidopsis thaliana]
Length = 1058
Score = 34.3 bits (75), Expect = 0.049
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +2
Query: 380 DTEEQKTKSRKRVKVDKERPMKLKRVTPSSDSCAETDEESGSEWK 514
++ E+ +K +K+ K +K++ + + PS +S ET+ E G+E K
Sbjct: 334 ESNEKSSKKKKKKKKNKKKSKQDESAEPSDNSSTETESEDGNEGK 378
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 31.5 bits (68), Expect = 0.35
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 389 EQKTKSRKRVKVDKERPMKLKRVTPSSDSCAETDEE 496
EQK++S+K K DKE+ K + SDS E D+E
Sbjct: 330 EQKSESKKAKKQDKEKKRKKDKKQTKSDSDFEHDKE 365
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +2
Query: 299 ADMLDEGEQQYILNRLSKQPQLLSNIPDTEEQKTKSRKRVKVDKERPMKLKRVTPSSDSC 478
A L++ ++Y+ + K + N P+TEEQ+ +S + + D R SD
Sbjct: 732 AHRLEQASEKYVGEFVKKAKHGVIN-PETEEQRAESNQLKRRDSRRSSGGSGAKGPSDEM 790
Query: 479 AETDEESGS 505
TD G+
Sbjct: 791 WVTDSAQGT 799
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 380 DTEEQKTKSRKRVKVDKERPMKLKRVTPSSDSCAETDEE 496
+ E++K K R+R + DK+R + SSDS + +EE
Sbjct: 70 EREKRKEKERERRRRDKDRVKRRSERRKSSDSEDDVEEE 108
>At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related
protein 2 (PAKRP2) identical to cDNA
phragmoplast-associated kinesin-related protein 2
(PAKRP2) GI:16973450
Length = 869
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +2
Query: 311 DEGEQQYIL-NRLSKQPQLLSNIPDTEEQKTKSR----KRVKVDKERPMKLKRVTPSSDS 475
DE IL +R++ + + + ++QK K R K++K +E L+ + ++
Sbjct: 382 DESASAVILGSRIAAMDEFIIKLQSEKKQKEKERNEAQKQLKKKEEEVAALRSLLTQREA 441
Query: 476 CAETDEE 496
CA +EE
Sbjct: 442 CATNEEE 448
>At2g30670.1 68415.m03740 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 262
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 489 SVSAQLSLLGVTRFNFIGRSLSTFTLFRDLVFCSSVSGMLDKSCGCLESLFK 334
S S +L + + L + F ++F SSV G++ CG + SL K
Sbjct: 112 SFSISTNLESAYHLSQLSHPLLKASEFGSIIFISSVGGVVSMECGSIYSLTK 163
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +2
Query: 338 NRLSKQPQLLSNIPDTEEQKTKSRKRVKVDKERPMKLKRVTPSSDSCAETDEES 499
++ K+ Q L + D++E++++ +K K DK+R + SDS +E + S
Sbjct: 28 SKKGKKEQKLK-LSDSDEEESEKKKSKKKDKKRKASEEEDEVKSDSSSEKKKSS 80
>At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1205
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 395 KTKSRKRVKVDKERPMKLKRVTPSS 469
+++ R RV + ERP+K R P+S
Sbjct: 1173 RSRKRMRVSIKNERPLKKSRTRPAS 1197
>At3g63120.1 68416.m07089 cyclin family protein similar to cyclin 2
[Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
cruzi] GI:12005317; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 221
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 351 LESLFKMYCCSPSSSISAH 295
L+ +FK CCSPS + AH
Sbjct: 79 LDRIFKYSCCSPSCFVIAH 97
>At5g49440.1 68418.m06117 expressed protein
Length = 181
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 398 TKSRKRVKVDKERPMKLKRVTPSSDSCAETDEE 496
T S + K ERP K + TP + CA+ EE
Sbjct: 53 TPSPELEKKQVERPEKRRSATPKTHRCAQIKEE 85
>At4g13970.1 68417.m02161 expressed protein
Length = 663
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 201 LQRHRTKVQKQNHPQSKPKRITAARVSRLAR 293
+QRH V+KQ P ++ +T V RL R
Sbjct: 136 MQRHNESVEKQGGPSNRDDLLTHRYVRRLER 166
>At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein,
putative very strong similarity to PIF3 like basic Helix
Loop Helix protein 2 (PIL2) [Arabidopsis thaliana]
GI:22535494
Length = 346
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 371 NIPDTEEQKTKSRKRVKVDKERPMKLKRVTPSSDS 475
++ D+E K S KR+ VD K+K + P S
Sbjct: 81 HVDDSETLKASSSKRMMVDYHNRKKIKFIPPDEQS 115
>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
identical to SP|O49160 Eukaryotic translation initiation
factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
{Arabidopsis thaliana}
Length = 900
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -1
Query: 510 HSLPDSSSVSAQLSLLGVTRFNFIGRSLSTFTLFR----DLVFCSSVSGMLDKSCGCLES 343
H+L D+ + L L+ + N +ST LF L C+ +GM+ +S CL
Sbjct: 507 HALMDNFVTARDLLLMSHLQDNIQHMDISTQILFNRTMAQLGLCAFRAGMITESHSCLSE 566
Query: 342 LF 337
L+
Sbjct: 567 LY 568
>At3g02860.2 68416.m00279 expressed protein
Length = 313
Score = 27.1 bits (57), Expect = 7.5
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +2
Query: 299 ADMLDEGEQQYILNRLSKQPQLLSNIPDTEEQKTKSRKRVKVDKERPMKLKRVTPSSDSC 478
A+ ++E EQ+ R K+ + E + + KR K + K K+ S S
Sbjct: 240 AETIEEEEQRE--QRSYKEKVEILKRKKMELKAARLAKRSKTSEGSVKKPKKTEEESPSD 297
Query: 479 AETDEESGSEWK 514
E DE+S +W+
Sbjct: 298 EEDDEDSAVDWR 309
>At3g02860.1 68416.m00278 expressed protein
Length = 312
Score = 27.1 bits (57), Expect = 7.5
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +2
Query: 299 ADMLDEGEQQYILNRLSKQPQLLSNIPDTEEQKTKSRKRVKVDKERPMKLKRVTPSSDSC 478
A+ ++E EQ+ R K+ + E + + KR K + K K+ S S
Sbjct: 239 AETIEEEEQRE--QRSYKEKVEILKRKKMELKAARLAKRSKTSEGSVKKPKKTEEESPSD 296
Query: 479 AETDEESGSEWK 514
E DE+S +W+
Sbjct: 297 EEDDEDSAVDWR 308
>At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 327
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 335 LNRLSKQPQLLSNIPDTEEQKTKSRKRVKVDKERPMKLKRVTPSSDSCAETDE 493
L+R+ +P ++ + + Q S KR KER K+K T + S E+D+
Sbjct: 131 LDRVKAEPAETDSMVENQNQSYSSGKR----KEREKKVKSSTKKNKSSVESDK 179
>At4g32330.1 68417.m04599 expressed protein
Length = 437
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 146 SQEKQSHH*QDEKTRSTQAPKA 211
SQ+KQ+H ++ T+S+ +PKA
Sbjct: 170 SQKKQAHETSEDDTQSSNSPKA 191
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,222,348
Number of Sequences: 28952
Number of extensions: 164276
Number of successful extensions: 632
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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