Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021011
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 112 2e-25
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 105 2e-23
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 105 2e-23
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 81 8e-16
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 81 8e-16
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 81 8e-16
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 81 1e-15
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 80 1e-15
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 78 7e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 77 1e-14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 73 2e-13
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 69 3e-12
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 62 5e-10
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 61 7e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 60 1e-09
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 59 4e-09
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 59 4e-09
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 57 1e-08
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 56 3e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 55 4e-08
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 54 1e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 53 2e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 52 3e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 5e-07
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 50 2e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 48 7e-06
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 48 7e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 48 7e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 46 4e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 46 4e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 45 5e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 45 5e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 45 6e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 44 8e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 1e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 3e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 42 3e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 3e-04
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 42 4e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 42 6e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 41 8e-04
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 40 0.001
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 40 0.001
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 40 0.001
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 40 0.002
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 40 0.002
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 39 0.003
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 39 0.004
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 39 0.004
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 39 0.004
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 37 0.012
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 37 0.017
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 37 0.017
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 37 0.017
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 35 0.067
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.15
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 32 0.47
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 31 0.62
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 31 0.82
At5g43990.2 68418.m05382 SET domain-containing protein identical... 29 2.5
At5g43990.1 68418.m05383 SET domain-containing protein identical... 29 2.5
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 3.3
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 3.3
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 3.3
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 29 3.3
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.8
At2g33420.1 68415.m04096 expressed protein 28 5.8
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 28 7.7
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 7.7
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 7.7
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 7.7
At1g47330.1 68414.m05240 expressed protein contains Pfam profile... 28 7.7
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 7.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 112 bits (270), Expect = 2e-25
Identities = 50/76 (65%), Positives = 61/76 (80%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKT 203
Query: 704 TCVFGGAPKREQARDL 751
TC++GG PK Q RDL
Sbjct: 204 TCIYGGVPKGPQVRDL 219
Score = 100 bits (240), Expect = 9e-22
Identities = 46/91 (50%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +1
Query: 238 SPR-LGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANF 414
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 415 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
PDYV + VK G+ EPTPIQ+QGWP+AM G+
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGR 137
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 105 bits (253), Expect = 2e-23
Identities = 48/76 (63%), Positives = 61/76 (80%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 704 TCVFGGAPKREQARDL 751
TC++GGAPK Q RDL
Sbjct: 270 TCIYGGAPKGPQIRDL 285
Score = 92.3 bits (219), Expect = 3e-19
Identities = 38/89 (42%), Positives = 58/89 (65%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPD 420
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ + + +G+ EPTPIQAQGWP+A+ G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 105 bits (253), Expect = 2e-23
Identities = 48/76 (63%), Positives = 61/76 (80%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 704 TCVFGGAPKREQARDL 751
TC++GGAPK Q RDL
Sbjct: 270 TCIYGGAPKGPQIRDL 285
Score = 92.3 bits (219), Expect = 3e-19
Identities = 38/89 (42%), Positives = 58/89 (65%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPD 420
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ + + +G+ EPTPIQAQGWP+A+ G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 81.0 bits (191), Expect = 8e-16
Identities = 40/76 (52%), Positives = 51/76 (67%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 704 TCVFGGAPKREQARDL 751
TC++GGAPK Q RDL
Sbjct: 262 TCLYGGAPKGPQLRDL 277
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/72 (44%), Positives = 41/72 (56%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGK 507
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 81.0 bits (191), Expect = 8e-16
Identities = 40/76 (52%), Positives = 51/76 (67%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 704 TCVFGGAPKREQARDL 751
TC++GGAPK Q RDL
Sbjct: 262 TCLYGGAPKGPQLRDL 277
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/72 (44%), Positives = 41/72 (56%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGK 507
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 81.0 bits (191), Expect = 8e-16
Identities = 40/76 (52%), Positives = 51/76 (67%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 704 TCVFGGAPKREQARDL 751
TC++GGAPK Q RDL
Sbjct: 262 TCLYGGAPKGPQLRDL 277
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/72 (44%), Positives = 41/72 (56%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGK 507
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/76 (50%), Positives = 52/76 (68%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +R
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRV 332
Query: 704 TCVFGGAPKREQARDL 751
+ V+GG K EQ ++L
Sbjct: 333 SAVYGGMSKHEQFKEL 348
Score = 71.3 bits (167), Expect = 6e-13
Identities = 28/84 (33%), Positives = 47/84 (55%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQG 435
+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
+K Y++PT IQ Q PI +SG+
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGR 266
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/76 (48%), Positives = 49/76 (64%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRC 633
Query: 704 TCVFGGAPKREQARDL 751
V+GG+ +Q +L
Sbjct: 634 VPVYGGSGVAQQISEL 649
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/84 (33%), Positives = 44/84 (52%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQG 435
+ +PF KNFY + + + EV YR E+ V G +V PI+ + + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
+K + Y++P PIQ Q PI MSG+
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 77.8 bits (183), Expect = 7e-15
Identities = 38/76 (50%), Positives = 52/76 (68%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISC 538
Query: 704 TCVFGGAPKREQARDL 751
TC++GGAPK Q ++L
Sbjct: 539 TCLYGGAPKGPQLKEL 554
Score = 62.1 bits (144), Expect = 4e-10
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +1
Query: 274 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVK 441
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 442 TMGYKEPTPIQAQGWPIAMSGK 507
+ G+ PTPIQAQ WPIA+ +
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSR 473
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/76 (47%), Positives = 48/76 (63%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIIC 500
Query: 704 TCVFGGAPKREQARDL 751
V+GG+ +Q +L
Sbjct: 501 VPVYGGSGVAQQISEL 516
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/84 (34%), Positives = 44/84 (52%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQG 435
+ +PF KNFY + + + V YR E+ V G +V PIQ + + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
+K + Y++P PIQAQ PI MSG+
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/76 (47%), Positives = 49/76 (64%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKISC 332
Query: 704 TCVFGGAPKREQARDL 751
C++GGAPK Q +++
Sbjct: 333 ACLYGGAPKGPQLKEI 348
Score = 34.7 bits (76), Expect = 0.067
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
V + G+ P+PIQAQ WPIAM +
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 331 EEYRNNHEVTVSGVEVHNPIQXFEEANFPD 420
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 69.3 bits (162), Expect = 3e-12
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 694
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLG 417
Query: 695 VRNTCVFGGAPKREQ 739
R T + GG EQ
Sbjct: 418 FRVTSIVGGQSIEEQ 432
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +1
Query: 337 YRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ +
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGL 348
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTS 691
+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPC 218
Query: 692 YVRNTCVFGGAPKREQ 739
+++ CV+GG+ K Q
Sbjct: 219 GLKSICVYGGSSKGPQ 234
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVEV--HNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 499 SGK 507
G+
Sbjct: 150 DGR 152
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 61.3 bits (142), Expect = 7e-10
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 688
QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQ 263
Query: 689 SYVRNTCVFGGAPKREQARDL 751
+ V+ +GG P +Q R+L
Sbjct: 264 TGVKVVVAYGGTPINQQLREL 284
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGV 438
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 439 KTMGYKEPTPIQAQGWPIAMSGK 507
+ Y +PTP+Q PI + G+
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGR 197
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 688
QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQ 250
Query: 689 SYVRNTCVFGGAPKREQARDL 751
+ V+ +GG P +Q R+L
Sbjct: 251 TGVKVVVAYGGTPVNQQIREL 271
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 268 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKT 444
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
Y +PTP+Q PI +G+
Sbjct: 164 CKYVKPTPVQRNAIPILAAGR 184
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 58.8 bits (136), Expect = 4e-09
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 688
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 689 SYVRNTCVFGGAPKREQARDL 751
+ V+ +GG P +Q R+L
Sbjct: 256 TGVKVVVAYGGTPIHQQLREL 276
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 355 VTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
V SG +V P+ F + + D + ++ Y PTP+Q PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 58.8 bits (136), Expect = 4e-09
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 688
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 689 SYVRNTCVFGGAPKREQARDL 751
+ V+ +GG P +Q R+L
Sbjct: 256 TGVKVVVAYGGTPIHQQLREL 276
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 355 VTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
V SG +V P+ F + + D + ++ Y PTP+Q PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 694
R +TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F ++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAP 203
Query: 695 VRNT-CVFGGAPKREQARDL 751
+T C++GG P +Q R L
Sbjct: 204 SLDTICLYGGTPIGQQMRQL 223
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 56.0 bits (129), Expect = 3e-08
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 694
R +TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++ +F ++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK---EFRESAP 215
Query: 695 VRNT-CVFGGAPKREQARDL 751
+T C++GG P +Q R+L
Sbjct: 216 SLDTICLYGGTPIGQQMREL 235
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 55.2 bits (127), Expect = 4e-08
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGH 685
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q ++Q A
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVE 202
Query: 686 TSY--VRNTCVFGGAPKREQ 739
Y +R+ GG R Q
Sbjct: 203 DGYPRLRSLLCIGGVDMRSQ 222
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/86 (31%), Positives = 46/86 (53%)
Frame = +1
Query: 250 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQ 429
G +P + ++ P V K S +++ R +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ +K G PTPIQ QG P+ +SG+
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGR 135
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +2
Query: 521 TQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 685
+ TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH 214
Query: 686 TSYVRNTCVFGGAPKREQARDL 751
+ R+ V GG+ R Q L
Sbjct: 215 HARFRSILVSGGSRIRPQEDSL 236
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVR 700
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H ++
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIV 135
Query: 701 NTCVFGGAPK-REQAR 745
V GG K +E+AR
Sbjct: 136 PGYVMGGEKKAKEKAR 151
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
MG++ PT +QAQ P+ +SG+
Sbjct: 48 MGFEAPTLVQAQAIPVILSGR 68
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFG 682
R +TG GKTLA++LP + + N P + G P LVL PTRELA+Q+ +G
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYG 198
Query: 683 HTSYVRNTCVFGG 721
+ + + C++GG
Sbjct: 199 GSLGLSSCCLYGG 211
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 679
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPT 465
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 466 PIQAQGWPIAMSGK 507
PIQ QG P+ ++G+
Sbjct: 171 PIQVQGLPVILAGR 184
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFG 682
R +TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE-- 202
Query: 683 HTSYVRNTCVFGG 721
Y+ CV+GG
Sbjct: 203 SAPYLSTVCVYGG 215
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 215
Query: 698 RNTCVFGGAPKREQ 739
+ V GG P Q
Sbjct: 216 KTALVVGGDPMSGQ 229
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 316 SPYEVEEYRNNHEVTVSGV--EVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 489
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 490 IAMSGKI*LA 519
A++GK LA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 78
Query: 698 RNTCVFGGAPKREQ 739
+ V GG P Q
Sbjct: 79 KTALVVGGDPMSGQ 92
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/76 (34%), Positives = 45/76 (59%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRV 129
Query: 704 TCVFGGAPKREQARDL 751
+ + GG +Q +L
Sbjct: 130 SLLVGGDSMEDQFEEL 145
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 706
TGSGKT A+ LP + + +P +R L+L PTRELA QI + + + ++
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCG 270
Query: 707 CVFGGAPKREQ 739
+ GG REQ
Sbjct: 271 LIVGGLSVREQ 281
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 358 TVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
TV GV H F E N + + +T+GYK+PTPIQA P+A++G+
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 45.6 bits (103), Expect = 4e-05
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 524 QTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 700
+TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 134 RTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEELLKHHSQT 191
Query: 701 NTCVFGGAPKREQAR 745
+ V GG +R +A+
Sbjct: 192 VSMVIGGNNRRSEAQ 206
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 655
+ +TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 694
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN 119
Query: 695 VRNTCVFGG 721
V + + GG
Sbjct: 120 VNSVLLVGG 128
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 658
R +TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 89 RAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 505 K 507
K
Sbjct: 84 K 84
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 44.4 bits (100), Expect = 8e-05
Identities = 30/76 (39%), Positives = 39/76 (51%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ + G +R
Sbjct: 103 QTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRC 157
Query: 704 TCVFGGAPKREQARDL 751
+ + GG Q L
Sbjct: 158 SVIVGGMDMLTQTMSL 173
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 340 RNNHEVTVSGVEVHNPIQXFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 655
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 655
+ +TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 655
+ +TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTS 691
Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+ +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSG 478
Query: 692 Y-VRNTCVFGGAPKREQARDL 751
R+ V GG +R Q +L
Sbjct: 479 VPFRSMVVTGGFRQRTQLENL 499
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 41.5 bits (93), Expect = 6e-04
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF--GHTSYV 697
+TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA + H+ V
Sbjct: 199 RTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTV 257
Query: 698 RNTCVFGGAPKREQARDL 751
V GG ++ +A L
Sbjct: 258 GK--VIGGEKRKTEAEIL 273
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/81 (24%), Positives = 34/81 (41%)
Frame = +1
Query: 265 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKT 444
+P K T K EVE+ ++ + + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTN---KTFESLSLSDNTYKSIKE 171
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
MG+ T IQA+ P M G+
Sbjct: 172 MGFARMTQIQAKAIPPLMMGE 192
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 694
TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA F T +
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPFVSTLAN 119
Query: 695 VRNTCVFGG 721
V + + GG
Sbjct: 120 VNSVLLVGG 128
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/45 (51%), Positives = 26/45 (57%)
Frame = +2
Query: 617 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 751
ALVLAPTRELAQQI++V G V+ GG RE R L
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVL 156
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 658
+ +TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/45 (51%), Positives = 26/45 (57%)
Frame = +2
Query: 617 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 751
ALVLAPTRELAQQI++V G V+ GG RE R L
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRIL 154
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADFG 682
QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI + G
Sbjct: 54 QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALG 113
Query: 683 HTSYVRNTCVFGGAPKREQ 739
+R + GG + +Q
Sbjct: 114 ADISLRCAVLVGGIDRMQQ 132
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 373 EVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGK 47
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/45 (51%), Positives = 26/45 (57%)
Frame = +2
Query: 617 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 751
ALVLAPTRELAQQI++V G V+ GG RE R L
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 154
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +2
Query: 494 LCLERFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 655
LC +TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 667
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
R + G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 698 RNTCVFGGAPKRE 736
+ GG ++
Sbjct: 229 QVMVTTGGTSLKD 241
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
FE+ + G+ G++ P+PIQ + PIA++G+ LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
R + G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 698 RNTCVFGGAPKRE 736
+ GG ++
Sbjct: 229 QVMVTTGGTSLKD 241
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
FE+ + G+ G++ P+PIQ + PIA++G+ LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 658
+ +TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
R + G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 698 RNTCVFGGAPKRE 736
+ GG R+
Sbjct: 222 QVMVTTGGTSLRD 234
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
FE+ + +G+ G+++P+PIQ + PIA++G LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
R + G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 698 RNTCVFGGAPKRE 736
+ GG R+
Sbjct: 222 QVMVTTGGTSLRD 234
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
FE+ + +G+ G+++P+PIQ + PIA++G LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
R + G+GKT A+ +P + I+ + + + A++L PTRELA Q QV + +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKI 251
Query: 698 RNTCVFGGAPKRE 736
GG R+
Sbjct: 252 EVMVTTGGTSLRD 264
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
FE+ + +G+ G+++P+PIQ + PIA++G LA
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILA 196
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.7 bits (76), Expect = 0.067
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 682
+ GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 33.5 bits (73), Expect = 0.15
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVA 670
++ TGSGKTLAY+LP + I R A+++AP+REL QI ++V
Sbjct: 153 QSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVE 212
Query: 671 ADFGHTSYVRNTCVFGGAPKREQARDL 751
G + GGA + Q L
Sbjct: 213 KLLGPVHRRMVQQLVGGANRMRQEEAL 239
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 31.9 bits (69), Expect = 0.47
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQI 658
+TGSGKTLA+ LP + + + DG + AL++ PTRELA Q+
Sbjct: 236 ETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQV 295
Query: 659 QQVAADFGHTSYVRNTCVFGGAPKREQARDL 751
+ + V+ + GG +Q R L
Sbjct: 296 TEHLENAAKNLSVKVVPIVGGMFSEKQERRL 326
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 385 PIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
PI+ F++ D V +GV GYK+P+ IQ + + G+
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGR 60
Score = 31.1 bits (67), Expect = 0.82
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +2
Query: 518 RTQTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 688
+ Q+G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT
Sbjct: 65 QAQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHT 117
Query: 689 SYVRNTCVFG 718
+ + C+ G
Sbjct: 118 NIQAHACIGG 127
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 31.1 bits (67), Expect = 0.82
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 617 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDL 751
AL+L+PTRELA Q ++ G H + + C+ GG E R L
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKL 150
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANF 414
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 415 PDYVQQGVKTM 447
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANF 414
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 415 PDYVQQGVKTM 447
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 658
+ ++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 658
+ ++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 658
+ ++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 180 LEDLEDLVGKKNSLEVRTCVAQIGICFTPTF 272
+ D++ +GK V C A++G+CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 657 ICCANSLVGAKTKAIGPSPLRI 592
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 19 SKRIHSLNKHLQLNPKI 69
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 423 CATRCKDNGLQRTDAYSSSRLADSYVWKDLVGVLKR 530
C T + GL+ + Y ++RLA S V K+L+ + +R
Sbjct: 966 CLTLVLEVGLRCCEEYPTNRLATSEVAKELISIRER 1001
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 527
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 401 KKQIFLIMCNKV*RQWVTKNRRLFKLKAGR*LCLERFSWRTQTGSGKTLAYILPA 565
K ++F C K Q+ + +FK++ G + + Q GSGKT PA
Sbjct: 332 KDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPA 386
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 19 SKRIHSLNKHLQLNPKI 69
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,587,312
Number of Sequences: 28952
Number of extensions: 322182
Number of successful extensions: 1071
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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